RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 GJB5O95377 273 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 DARSP14868 501 aaKnown RBP13.25□□□□□ -0.29
LIG3-213ENST00000590630 PBX2P40425 430 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 RABGGTBP53611 331 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 NFX1Q12986 1120 aaKnown RBP13.25□□□□□ -0.29
LIG3-213ENST00000590630 BECN1Q14457 450 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 MXD4Q14582 209 aaPredicted RBP13.25□□□□□ -0.29
LIG3-213ENST00000590630 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.25□□□□□ -0.29
LIG3-213ENST00000590630 RHPN2Q8IUC4 686 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 MYOCDQ8IZQ8 938 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 KCTD17Q8N5Z5 321 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 DEFB123Q8N688 67 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 SPRYD3Q8NCJ5 442 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 TMEM143Q96AN5 459 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 ZBED2Q9BTP6 218 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 GCOM2Q9BZD3 368 aaPredicted RBP13.25□□□□□ -0.29
LIG3-213ENST00000590630 TSPYL2Q9H2G4 693 aaPredicted RBP13.25□□□□□ -0.29
LIG3-213ENST00000590630 ERVK-5Q9HDB9 667 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 ST3GAL5Q9UNP4 418 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 KIAA1024Q9UPX6 916 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 COL4A3BPQ9Y5P4 624 aa13.25□□□□□ -0.29
LIG3-213ENST00000590630 ARHGEF35A5YM69 484 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 PP2D1A8MPX8 630 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 ENPP3O14638 875 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 ASAP2O43150 1006 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 SLC26A4O43511 780 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 TLL1O43897 1013 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 ZSCAN22P10073 491 aaPredicted RBP13.24□□□□□ -0.29
LIG3-213ENST00000590630 LONP1P36776 959 aaKnown RBP13.24□□□□□ -0.29
LIG3-213ENST00000590630 LAMTOR4Q0VGL1 99 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 PTPAQ15257 358 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 ECM1Q16610 540 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 HYIQ5T013 277 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 FAM173BQ6P4H8 233 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 FAM228AQ86W67 206 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 MCPH1Q8NEM0 835 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 PRPF31Q8WWY3 499 aaKnown RBP13.24□□□□□ -0.29
LIG3-213ENST00000590630 TOP1MTQ969P6 601 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 NLRP4Q96MN2 994 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 RAD9AQ99638 391 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 MMTAG2Q9BU76 263 aaKnown RBP13.24□□□□□ -0.29
LIG3-213ENST00000590630 INO80BQ9C086 356 aaPredicted RBP13.24□□□□□ -0.29
LIG3-213ENST00000590630 NT5C3AQ9H0P0 336 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 SLC28A3Q9HAS3 691 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 XPNPEP1Q9NQW7 623 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 BMP2KQ9NSY1 1161 aaPredicted RBP13.24□□□□□ -0.29
LIG3-213ENST00000590630 DDX19AQ9NUU7 478 aaKnown RBP13.24□□□□□ -0.29
LIG3-213ENST00000590630 DNM3Q9UQ16 869 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 CLIC4Q9Y696 253 aa13.24□□□□□ -0.29
LIG3-213ENST00000590630 MORC2Q9Y6X9 1032 aaPredicted RBP13.24□□□□□ -0.29
LIG3-213ENST00000590630 MYH11P35749 1972 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 A0A087WWV3 80 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 A0A087WZ62 844 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 RBAK-RBAKDNI3L0D1 243 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 USO1O60763 962 aaKnown RBP13.23□□□□□ -0.29
LIG3-213ENST00000590630 SFPQP23246 707 aaKnown RBP eCLIP13.23□□□□□ -0.29
LIG3-213ENST00000590630 CDC25AP30304 524 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 PADI6Q6TGC4 694 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 TMCO2Q7Z6W1 182 aaPredicted RBP13.23□□□□□ -0.29
LIG3-213ENST00000590630 KSR1Q8IVT5 923 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 ZNF668Q96K58 619 aaPredicted RBP13.23□□□□□ -0.29
LIG3-213ENST00000590630 FDXACB1Q9BRP7 624 aaPredicted RBP13.23□□□□□ -0.29
LIG3-213ENST00000590630 BHMT2Q9H2M3 363 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 TMX1Q9H3N1 280 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 ZNF576Q9H609 170 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 C1orf112Q9NSG2 853 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 RNF216Q9NWF9 866 aaPredicted RBP13.23□□□□□ -0.29
LIG3-213ENST00000590630 YBX2Q9Y2T7 364 aaKnown RBP13.23□□□□□ -0.29
LIG3-213ENST00000590630 INSL6Q9Y581 213 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 COL4A6Q14031 1691 aa13.23□□□□□ -0.29
LIG3-213ENST00000590630 DENND3A2RUS2 1198 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 EYA4O95677 639 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 F13A1P00488 732 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 CA3P07451 260 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 MYOGP15173 224 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 CYP11B2P19099 503 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 ARL2P36404 184 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 UBA7P41226 1012 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 NASPP49321 788 aaPredicted RBP13.22□□□□□ -0.29
LIG3-213ENST00000590630 HTRA4P83105 476 aaPredicted RBP13.22□□□□□ -0.29
LIG3-213ENST00000590630 POU5F1BQ06416 359 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 TFDP1Q14186 410 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 SLC39A14Q15043 492 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 PPP2R2DQ66LE6 453 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 Q7L0L9 218 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 SRGAP1Q7Z6B7 1085 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 RTN4RL1Q86UN2 441 aaPredicted RBP13.22□□□□□ -0.29
LIG3-213ENST00000590630 RNF149Q8NC42 400 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 LINC01599Q8WXQ3 324 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 CDK5RAP3Q96JB5 506 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 ZNF396Q96N95 335 aaPredicted RBP13.22□□□□□ -0.29
LIG3-213ENST00000590630 USP28Q96RU2 1077 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 NKX2-4Q9H2Z4 354 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 TTYH1Q9H313 450 aaPredicted RBP13.22□□□□□ -0.29
LIG3-213ENST00000590630 SEMA6BQ9H3T3 888 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 IFT122Q9HBG6 1241 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 RGS18Q9NS28 235 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 SRPRBQ9Y5M8 271 aaKnown RBP13.22□□□□□ -0.29
LIG3-213ENST00000590630 NLRC5Q86WI3 1866 aa13.22□□□□□ -0.29
LIG3-213ENST00000590630 PRUNE2Q8WUY3 3088 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms