RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 ZBTB47Q9UFB7 747 aaPredicted RBP12.57□□□□□ -0.4
ZNF540-209ENST00000590588 UBIAD1Q9Y5Z9 338 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 SALL3Q9BXA9 1300 aa12.57□□□□□ -0.4
ZNF540-209ENST00000590588 SPTLC1O15269 473 aa12.56□□□□□ -0.4
ZNF540-209ENST00000590588 HBP1O60381 514 aa12.56□□□□□ -0.4
ZNF540-209ENST00000590588 BCAR1P56945 870 aa12.56□□□□□ -0.4
ZNF540-209ENST00000590588 SEC23AQ15436 765 aa12.56□□□□□ -0.4
ZNF540-209ENST00000590588 IMMTQ16891 758 aaKnown RBP12.56□□□□□ -0.4
ZNF540-209ENST00000590588 C20orf194Q5TEA3 1177 aa12.56□□□□□ -0.4
ZNF540-209ENST00000590588 DDX53Q86TM3 631 aaKnown RBP12.56□□□□□ -0.4
ZNF540-209ENST00000590588 ECHDC2Q86YB7 292 aa12.56□□□□□ -0.4
ZNF540-209ENST00000590588 RSAD2Q8WXG1 361 aa12.56□□□□□ -0.4
ZNF540-209ENST00000590588 AUTS2Q8WXX7 1259 aa12.56□□□□□ -0.4
ZNF540-209ENST00000590588 OSMRQ99650 979 aa12.56□□□□□ -0.4
ZNF540-209ENST00000590588 GBP2P32456 591 aaPredicted RBP12.55□□□□□ -0.4
ZNF540-209ENST00000590588 ACTR2P61160 394 aa12.55□□□□□ -0.4
ZNF540-209ENST00000590588 CACNB1Q02641 598 aaPredicted RBP12.55□□□□□ -0.4
ZNF540-209ENST00000590588 PTPN14Q15678 1187 aa12.55□□□□□ -0.4
ZNF540-209ENST00000590588 KIZQ2M2Z5 673 aa12.55□□□□□ -0.4
ZNF540-209ENST00000590588 MAML2Q8IZL2 1156 aaPredicted RBP12.55□□□□□ -0.4
ZNF540-209ENST00000590588 RNF169Q8NCN4 708 aa12.55□□□□□ -0.4
ZNF540-209ENST00000590588 FEZF2Q8TBJ5 459 aa12.55□□□□□ -0.4
ZNF540-209ENST00000590588 GPR152Q8TDT2 470 aa12.55□□□□□ -0.4
ZNF540-209ENST00000590588 ATRIPQ8WXE1 791 aa12.55□□□□□ -0.4
ZNF540-209ENST00000590588 STAMQ92783 540 aa12.55□□□□□ -0.4
ZNF540-209ENST00000590588 MRPL9Q9BYD2 267 aaKnown RBP12.55□□□□□ -0.4
ZNF540-209ENST00000590588 FBXO4Q9UKT5 387 aa12.55□□□□□ -0.4
ZNF540-209ENST00000590588 FANCMQ8IYD8 2048 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 SPTBN2O15020 2390 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 GPR32O75388 356 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 ATG7O95352 703 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 KLRC2P26717 231 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 CLCN4P51793 760 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 PDE1AP54750 535 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 ZNF484Q5JVG2 852 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 CLLU1OSQ5K130 101 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 DCLRE1AQ6PJP8 1040 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 CYP26C1Q6V0L0 522 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 PJA1Q8NG27 643 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 PIBF1Q8WXW3 757 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 SHDQ96IW2 340 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 PPP1R16BQ96T49 567 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 SDF4Q9BRK5 362 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 EMILIN2Q9BXX0 1053 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 ARHGEF3Q9NR81 526 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 EPS15L1Q9UBC2 864 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 RCAN3Q9UKA8 241 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 PCDHGA2Q9Y5H1 932 aa12.54□□□□□ -0.4
ZNF540-209ENST00000590588 A0A0U1RQF3 1178 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 POTEMA6NI47 508 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 LAMTOR5O43504 91 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 N4BP1O75113 896 aaKnown RBP12.53□□□□□ -0.4
ZNF540-209ENST00000590588 GLULP15104 373 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 SDSP20132 328 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 STARD6P59095 220 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 COL9A2Q14055 689 aaPredicted RBP12.53□□□□□ -0.4
ZNF540-209ENST00000590588 ANKRD45Q5TZF3 282 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 POTEGQ6S5H5 508 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 CMASQ8NFW8 434 aaPredicted RBP12.53□□□□□ -0.4
ZNF540-209ENST00000590588 HELQQ8TDG4 1101 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 RSPH1Q8WYR4 309 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 RILPL2Q969X0 211 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 IGSF21Q96ID5 467 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 PSTPIP2Q9H939 334 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 WDR6Q9NNW5 1121 aaKnown RBP12.53□□□□□ -0.4
ZNF540-209ENST00000590588 KCNH7Q9NS40 1196 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 STK39Q9UEW8 545 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 USP18Q9UMW8 372 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 NFASCO94856 1347 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 COL1A2P08123 1366 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 BAZ2BQ9UIF8 2168 aaKnown RBP12.53□□□□□ -0.4
ZNF540-209ENST00000590588 BAHCC1Q9P281 2608 aa12.53□□□□□ -0.4
ZNF540-209ENST00000590588 MAP1BP46821 2468 aaKnown RBP12.52□□□□□ -0.4
ZNF540-209ENST00000590588 IGKV6D-21A0A0A0MT36 114 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 ERICH2A1L162 156 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 SPDYE3A6NKU9 549 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 ZC3H11AO75152 810 aaKnown RBP eCLIP12.52□□□□□ -0.41
ZNF540-209ENST00000590588 VTNP04004 478 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 TROAPQ12815 778 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 FAM160B1Q5W0V3 765 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 CYB5R4Q7L1T6 521 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 ZNF710Q8N1W2 664 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 METTL13Q8N6R0 699 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 RRP36Q96EU6 259 aaKnown RBP12.52□□□□□ -0.41
ZNF540-209ENST00000590588 KLHL5Q96PQ7 755 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 MXRA8Q9BRK3 442 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 DSCC1Q9BVC3 393 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 BCO2Q9BYV7 579 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 RHOBTB2Q9BYZ6 727 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 SLC2A4RGQ9NR83 387 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 SPATA6Q9NWH7 488 aaPredicted RBP12.52□□□□□ -0.41
ZNF540-209ENST00000590588 DPP7Q9UHL4 492 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 DENND4AQ7Z401 1863 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 CHD6Q8TD26 2715 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 CACNA1IQ9P0X4 2223 aa12.52□□□□□ -0.41
ZNF540-209ENST00000590588 CCDC195A0A1B0GUA6 201 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 BACH1O14867 736 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 TBC1D4O60343 1298 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 TGM1P22735 817 aa12.51□□□□□ -0.41
ZNF540-209ENST00000590588 EIF4BP23588 611 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms