RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 EFCAB12Q6NXP0 572 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 PIK3AP1Q6ZUJ8 805 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 SLC24A5Q71RS6 500 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 C4orf19Q8IY42 314 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 FIBCD1Q8N539 461 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 METTL13Q8N6R0 699 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 POP1Q99575 1024 aaKnown RBP11.78□□□□□ -0.52
LIG3-212ENST00000590181 LMAN2LQ9H0V9 348 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 ELAC1Q9H777 363 aaKnown RBP11.78□□□□□ -0.52
LIG3-212ENST00000590181 CHST12Q9NRB3 414 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 PADI3Q9ULW8 664 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 PCDHA12Q9UN75 941 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 PLXNA4Q9HCM2 1894 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 CFAP54Q96N23 3096 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 ADAMTS3O15072 1205 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 PPFIA3O75145 1194 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 DGKIO75912 1065 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 CSPG5O95196 566 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 TDP2O95551 362 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 SKIP12755 728 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 ZSCAN20P17040 1043 aaPredicted RBP11.77□□□□□ -0.53
LIG3-212ENST00000590181 MUTP22033 750 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 RFC5P40937 340 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 ZNF410Q86VK4 478 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 CMTR2Q8IYT2 770 aaKnown RBP11.77□□□□□ -0.53
LIG3-212ENST00000590181 FAM184AQ8NB25 1140 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 TCP11Q8WWU5 503 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 SLC7A3Q8WY07 619 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 CLP1Q92989 425 aaKnown RBP11.77□□□□□ -0.53
LIG3-212ENST00000590181 TNFRSF25Q93038 417 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 ZNF689Q96CS4 500 aaPredicted RBP11.77□□□□□ -0.53
LIG3-212ENST00000590181 AIFM3Q96NN9 605 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 C11orf84Q9BUA3 381 aaPredicted RBP11.77□□□□□ -0.53
LIG3-212ENST00000590181 ZSWIM4Q9H7M6 989 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 RGS18Q9NS28 235 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 DACT1Q9NYF0 836 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 MUTYHQ9UIF7 546 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 LRFN2Q9ULH4 789 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 PCDHB7Q9Y5E2 793 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 ADGRA3Q8IWK6 1321 aa11.77□□□□□ -0.53
LIG3-212ENST00000590181 IGKV6-21A0A0C4DH24 114 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 FSD2A1L4K1 749 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 DENND3A2RUS2 1198 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 ZNF862O60290 1169 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 GPR32O75388 356 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 MAFO75444 373 aaPredicted RBP11.76□□□□□ -0.53
LIG3-212ENST00000590181 LYPLA2O95372 231 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 SEC24BO95487 1268 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 EOMESO95936 686 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 CD52P31358 61 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 SARSP49591 514 aaKnown RBP11.76□□□□□ -0.53
LIG3-212ENST00000590181 FAM189BP81408 668 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 SMAD2Q15796 467 aaKnown RBP11.76□□□□□ -0.53
LIG3-212ENST00000590181 DIS3L2Q8IYB7 885 aaKnown RBP11.76□□□□□ -0.53
LIG3-212ENST00000590181 CRIPAKQ8N1N5 446 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 LINC01465Q8N7H1 131 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 NECAB1Q8N987 351 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 FBXO18Q8NFZ0 1043 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 TRAPPC12Q8WVT3 735 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 P2RX5Q93086 422 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 C8orf76Q96K31 380 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 SNX27Q96L92 541 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 MFSD14AQ96MC6 490 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 TRAIPQ9BWF2 469 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 AGO3Q9H9G7 860 aaKnown RBP11.76□□□□□ -0.53
LIG3-212ENST00000590181 AAASQ9NRG9 546 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 ZDBF2Q9HCK1 2354 aa11.76□□□□□ -0.53
LIG3-212ENST00000590181 DDX11L8A8MPP1 907 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 BTBD18B2RXH4 712 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 MBTPS2O43462 519 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 CHMP2AO43633 222 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 NEMFO60524 1076 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 TBX10O75333 385 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 BMPR1AP36894 532 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 LTBRP36941 435 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 POU5F1BQ06416 359 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 NFX1Q12986 1120 aaKnown RBP11.75□□□□□ -0.53
LIG3-212ENST00000590181 SMAD4Q13485 552 aaKnown RBP11.75□□□□□ -0.53
LIG3-212ENST00000590181 MXD4Q14582 209 aaPredicted RBP11.75□□□□□ -0.53
LIG3-212ENST00000590181 CALCRLQ16602 461 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 KCTD17Q8N5Z5 321 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 HAS1Q92839 578 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 PPP2R3CQ969Q6 453 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 GCOM2Q9BZD3 368 aaPredicted RBP11.75□□□□□ -0.53
LIG3-212ENST00000590181 OSBPL7Q9BZF2 842 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 ERVK-5Q9HDB9 667 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 CYP26B1Q9NR63 512 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 VAV3Q9UKW4 847 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 NOL7Q9UMY1 257 aaKnown RBP11.75□□□□□ -0.53
LIG3-212ENST00000590181 ST3GAL5Q9UNP4 418 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 AKT3Q9Y243 479 aa11.75□□□□□ -0.53
LIG3-212ENST00000590181 LAD1O00515 517 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 SLC37A4O43826 429 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 SFPQP23246 707 aaKnown RBP eCLIP11.74□□□□□ -0.53
LIG3-212ENST00000590181 NLRP11P59045 1033 aaKnown RBP11.74□□□□□ -0.53
LIG3-212ENST00000590181 DLX2Q07687 328 aaPredicted RBP11.74□□□□□ -0.53
LIG3-212ENST00000590181 HYAL1Q12794 435 aa11.74□□□□□ -0.53
LIG3-212ENST00000590181 GNL2Q13823 731 aaKnown RBP11.74□□□□□ -0.53
LIG3-212ENST00000590181 BTG3Q14201 252 aaPredicted RBP11.74□□□□□ -0.53
LIG3-212ENST00000590181 HERC4Q5GLZ8 1057 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms