RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 LRRC2Q9BYS8 371 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 TBC1D22BQ9NU19 505 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 RNF19AQ9NV58 838 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 RBM28Q9NW13 759 aaKnown RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 TCEAL9Q9UHQ7 104 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 DBR1Q9UK59 544 aaKnown RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 AKT3Q9Y243 479 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 MAFBQ9Y5Q3 323 aaPredicted RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 V9GY48 417 aaPredicted RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 FNDC1Q4ZHG4 1894 aaPredicted RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 LOXHD1Q8IVV2 1947 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 SPTBN4Q9H254 2564 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 FAM86B1E9PN63 330 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 DHX15O43143 795 aaKnown RBP11.26□□□□□ -0.61
RFFL-208ENST00000581039 EOMESO95936 686 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 ASGR2P07307 311 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 PSAPP07602 524 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 FAM86B2P0C5J1 330 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 EIF4BP23588 611 aaKnown RBP11.26□□□□□ -0.61
RFFL-208ENST00000581039 CLCN5P51795 746 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 RARS2Q5T160 578 aaKnown RBP11.26□□□□□ -0.61
RFFL-208ENST00000581039 MCTP2Q6DN12 878 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 TYW1BQ6NUM6 668 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 EFCAB12Q6NXP0 572 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 FRMD5Q7Z6J6 570 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 SGMS1Q86VZ5 419 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 SLC39A11Q8N1S5 342 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 C12orf76Q8N812 135 aaPredicted RBP11.26□□□□□ -0.61
RFFL-208ENST00000581039 TDRD5Q8NAT2 981 aaKnown RBP11.26□□□□□ -0.61
RFFL-208ENST00000581039 TMEM169Q96HH4 297 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 ZNF577Q9BSK1 485 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 SMOC2Q9H3U7 446 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 PCDHA10Q9Y5I2 948 aa11.26□□□□□ -0.61
RFFL-208ENST00000581039 A0A0U1RQF3 1178 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 NT5C1B-RDH14C9J2C7 533 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 hCG_1984214I3L0E3 225 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 SLC27A2O14975 620 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 METAP2P50579 478 aaKnown RBP eCLIP11.25□□□□□ -0.61
RFFL-208ENST00000581039 CLCN3P51790 818 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 GIT2Q14161 759 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 CLLU1OSQ5K130 101 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 JAKMIP3Q5VZ66 844 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 ZNF746Q6NUN9 644 aaPredicted RBP11.25□□□□□ -0.61
RFFL-208ENST00000581039 SMAP1Q8IYB5 467 aaPredicted RBP11.25□□□□□ -0.61
RFFL-208ENST00000581039 VPS52Q8N1B4 723 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 ZNF713Q8N859 430 aaPredicted RBP11.25□□□□□ -0.61
RFFL-208ENST00000581039 FLCNQ8NFG4 579 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 HELQQ8TDG4 1101 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 FAM167AQ96KS9 214 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 SCLT1Q96NL6 688 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 MRPL9Q9BYD2 267 aaKnown RBP11.25□□□□□ -0.61
RFFL-208ENST00000581039 ADAMTS10Q9H324 1103 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 CYP26B1Q9NR63 512 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 NRBP2Q9NSY0 501 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 DZANK1Q9NVP4 752 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 BARHL2Q9NY43 387 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 DACT1Q9NYF0 836 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 GABBR1Q9UBS5 961 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 USTQ9Y2C2 406 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 SAMM50Q9Y512 469 aa11.25□□□□□ -0.61
RFFL-208ENST00000581039 FAM186AA6NE01 2351 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 IGLV3-22A0A075B6J6 115 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.24□□□□□ -0.61
RFFL-208ENST00000581039 CYP3A4P08684 503 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 CLK2P49760 499 aaKnown RBP11.24□□□□□ -0.61
RFFL-208ENST00000581039 BCAR1P56945 870 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 COL9A3Q14050 684 aaPredicted RBP11.24□□□□□ -0.61
RFFL-208ENST00000581039 RTN1Q16799 776 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 KIAA1841Q6NSI8 718 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 KANK3Q6NY19 840 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 ERMP1Q7Z2K6 904 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 ADSSL1Q8N142 457 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 LRRC71Q8N4P6 559 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 ACSF2Q96CM8 615 aaPredicted RBP11.24□□□□□ -0.61
RFFL-208ENST00000581039 ZNF668Q96K58 619 aaPredicted RBP11.24□□□□□ -0.61
RFFL-208ENST00000581039 CNTNAP5Q8WYK1 1306 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 MYO10Q9HD67 2058 aa11.24□□□□□ -0.61
RFFL-208ENST00000581039 CARNS1A5YM72 827 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 SPDYE4A6NLX3 237 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 ZBTB43O43298 467 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 DARSP14868 501 aaKnown RBP11.23□□□□□ -0.61
RFFL-208ENST00000581039 EPCAMP16422 314 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 ID4P47928 161 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 GPC3P51654 580 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 POLGP54098 1239 aaPredicted RBP11.23□□□□□ -0.61
RFFL-208ENST00000581039 SETQ01105 290 aaPredicted RBP11.23□□□□□ -0.61
RFFL-208ENST00000581039 NECTIN1Q15223 517 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 CREB3L3Q68CJ9 461 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 APOA5Q6Q788 366 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 TMC5Q6UXY8 1006 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 OTOP3Q7RTS5 596 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 DDX53Q86TM3 631 aaKnown RBP11.23□□□□□ -0.61
RFFL-208ENST00000581039 ZNF598Q86UK7 904 aaKnown RBP11.23□□□□□ -0.61
RFFL-208ENST00000581039 CABP7Q86V35 215 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 PPFIBP1Q86W92 1011 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 NLRP7Q8WX94 980 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 AUTS2Q8WXX7 1259 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 LSG1Q9H089 658 aaKnown RBP11.23□□□□□ -0.61
RFFL-208ENST00000581039 CHST12Q9NRB3 414 aa11.23□□□□□ -0.61
RFFL-208ENST00000581039 IRAK3Q9Y616 596 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms