RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SPATA1Q5VX52 437 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 ZNF720Q7Z2F6 126 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 RNF180Q86T96 592 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 DHX40Q8IX18 779 aaKnown RBP16.87■□□□□ 0.29
SS18-215ENST00000580642 GOLGA5Q8TBA6 731 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 NOC3LQ8WTT2 800 aaKnown RBP16.87■□□□□ 0.29
SS18-215ENST00000580642 TSEN34Q9BSV6 310 aaKnown RBP16.87■□□□□ 0.29
SS18-215ENST00000580642 MTG1Q9BT17 334 aaPredicted RBP16.87■□□□□ 0.29
SS18-215ENST00000580642 STRA6Q9BX79 667 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 SLC39A2Q9NP94 309 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 XPNPEP1Q9NQW7 623 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 CGNQ9P2M7 1197 aaKnown RBP16.87■□□□□ 0.29
SS18-215ENST00000580642 PTCH2Q9Y6C5 1203 aa16.87■□□□□ 0.29
SS18-215ENST00000580642 RSPH10B2B2RC85 870 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 FGFR1OPO95684 399 aaKnown RBP16.86■□□□□ 0.29
SS18-215ENST00000580642 RSPH10BP0C881 870 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 ZNF286BP0CG31 522 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 INSRRP14616 1297 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 CD44P16070 742 aaKnown RBP16.86■□□□□ 0.29
SS18-215ENST00000580642 CAPN2P17655 700 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 TMOD1P28289 359 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 CCND3P30281 292 aaPredicted RBP16.86■□□□□ 0.29
SS18-215ENST00000580642 NAMPTP43490 491 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 NCKAP1LP55160 1127 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 POU5F1BQ06416 359 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 RAD51AP2Q09MP3 1159 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 TRIM32Q13049 653 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 MFSD10Q14728 455 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 TMEM174Q8WUU8 243 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 NELFBQ8WX92 580 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 PSPC1Q8WXF1 523 aaKnown RBP16.86■□□□□ 0.29
SS18-215ENST00000580642 KAT2BQ92831 832 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 P2RX5Q93086 422 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 FIZ1Q96SL8 496 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 SEZ6LQ9BYH1 1024 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 TMEM206Q9H813 350 aa16.86■□□□□ 0.29
SS18-215ENST00000580642 MOXD2PA6NHM9 499 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 PPP1R37O75864 691 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 C22orf31O95567 290 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 PSEN2P49810 448 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 GTF2BQ00403 316 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 CACNB1Q02641 598 aaPredicted RBP16.85■□□□□ 0.29
SS18-215ENST00000580642 PPFIA1Q13136 1202 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 NCAPHQ15003 741 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 NFIL3Q16649 462 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 CCSAPQ6IQ19 270 aaPredicted RBP16.85■□□□□ 0.29
SS18-215ENST00000580642 SESTD1Q86VW0 696 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 ARRDC4Q8NCT1 418 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 RNF214Q8ND24 703 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 SCFD1Q8WVM8 642 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 TSG101Q99816 390 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 WDR81Q562E7 1941 aa16.85■□□□□ 0.29
SS18-215ENST00000580642 PDXKO00764 312 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 GCNT3O95395 438 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 MYL3P08590 195 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 PTGS1P23219 599 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 HOXC8P31273 242 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 NPTX2P47972 431 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 CTCFP49711 727 aaPredicted RBP16.84■□□□□ 0.29
SS18-215ENST00000580642 EFNA5P52803 228 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 TFDP1Q14186 410 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 MYBPC2Q14324 1141 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 GRIK4Q16099 956 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 KNOP1Q1ED39 458 aaKnown RBP16.84■□□□□ 0.29
SS18-215ENST00000580642 KIAA0753Q2KHM9 967 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 EDRF1Q3B7T1 1238 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 TRMT1LQ7Z2T5 733 aaKnown RBP16.84■□□□□ 0.29
SS18-215ENST00000580642 CTU1Q7Z7A3 348 aaKnown RBP16.84■□□□□ 0.29
SS18-215ENST00000580642 LUZP1Q86V48 1076 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 SMYD4Q8IYR2 804 aaPredicted RBP16.84■□□□□ 0.29
SS18-215ENST00000580642 AOPEPQ8N6M6 819 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 NFKBIZQ9BYH8 718 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 POLR3FQ9H1D9 316 aaPredicted RBP16.84■□□□□ 0.29
SS18-215ENST00000580642 KMT5AQ9NQR1 393 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 TSKSQ9UJT2 592 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 EXOC7Q9UPT5 735 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 TRAF3IP3Q9Y228 551 aa16.84■□□□□ 0.29
SS18-215ENST00000580642 MBLAC1A4D2B0 266 aaPredicted RBP16.83■□□□□ 0.28
SS18-215ENST00000580642 SFI1A8K8P3 1242 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 HSPA8P11142 646 aaKnown RBP16.83■□□□□ 0.28
SS18-215ENST00000580642 PRKCSHP14314 528 aaPredicted RBP16.83■□□□□ 0.28
SS18-215ENST00000580642 KLRC1P26715 233 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 PEX3P56589 373 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 PTPN11Q06124 597 aaPredicted RBP16.83■□□□□ 0.28
SS18-215ENST00000580642 SPAG1Q07617 926 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 HSP90AA2PQ14568 343 aaPredicted RBP16.83■□□□□ 0.28
SS18-215ENST00000580642 LHX8Q68G74 356 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 KLHL10Q6JEL2 608 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 TTI2Q6NXR4 508 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 MTHFD1LQ6UB35 978 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 HAUS6Q7Z4H7 955 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 LINC01465Q8N7H1 131 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 ANP32BQ92688 251 aaKnown RBP16.83■□□□□ 0.28
SS18-215ENST00000580642 HPS3Q969F9 1004 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 LENG1Q96BZ8 264 aaPredicted RBP16.83■□□□□ 0.28
SS18-215ENST00000580642 SH2D3AQ9BRG2 576 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 C2orf40Q9H1Z8 148 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 THAP9Q9H5L6 903 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 TMEM134Q9H6X4 195 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 TYW1Q9NV66 732 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms