RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 HYAL1Q12794 435 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 MKRN4PQ13434 485 aaPredicted RBP11.35□□□□□ -0.59
SS18-207ENST00000577636 CALCRLQ16602 461 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 UBE2SQ16763 222 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 ANO6Q4KMQ2 910 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 SPECC1Q5M775 1068 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 PPP4R3AQ6IN85 833 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 CYFIP1Q7L576 1253 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 VSIG10LQ86VR7 867 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 PHOX2BQ99453 314 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 FUCA2Q9BTY2 467 aa11.35□□□□□ -0.59
SS18-207ENST00000577636 BECN2A8MW95 431 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 GCOM1H8Y6P7 765 aaPredicted RBP11.34□□□□□ -0.59
SS18-207ENST00000577636 LINC01565O15544 149 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 MBTPS2O43462 519 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 NCK2O43639 380 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 POLR2MP0CAP2 368 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 TGFB3P10600 412 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 GHRP10912 638 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 HOXD8P13378 290 aaPredicted RBP11.34□□□□□ -0.59
SS18-207ENST00000577636 BMPR1AP36894 532 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 CLK2P49760 499 aaKnown RBP11.34□□□□□ -0.59
SS18-207ENST00000577636 ZNF165P49910 485 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 POSTNQ15063 836 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 LONRF3Q496Y0 759 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 RNF135Q8IUD6 432 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 PDILTQ8N807 584 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 APBB2Q92870 758 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 DHX58Q96C10 678 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 TRIM44Q96DX7 344 aaPredicted RBP11.34□□□□□ -0.59
SS18-207ENST00000577636 ANO3Q9BYT9 981 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 KCNH6Q9H252 994 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 ALG13Q9NP73 1137 aaKnown RBP11.34□□□□□ -0.59
SS18-207ENST00000577636 DDX25Q9UHL0 483 aaKnown RBP11.34□□□□□ -0.59
SS18-207ENST00000577636 DACH1Q9UI36 760 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 MYH7BA7E2Y1 1941 aa11.34□□□□□ -0.59
SS18-207ENST00000577636 PIK3CDO00329 1044 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 ADAMTS3O15072 1205 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 RB1P06400 928 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 SLFN14P0C7P3 912 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 IBSPP21815 317 aaPredicted RBP11.33□□□□□ -0.6
SS18-207ENST00000577636 ZNF76P36508 570 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 STAT6P42226 847 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 NDUFV1P49821 464 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 BTG3Q14201 252 aaPredicted RBP11.33□□□□□ -0.6
SS18-207ENST00000577636 SMAD2Q15796 467 aaKnown RBP11.33□□□□□ -0.6
SS18-207ENST00000577636 IER5LQ5T953 404 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 RRAGBQ5VZM2 374 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 USP17L6PQ6QN14 398 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 MOXD1Q6UVY6 613 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 TRIM50Q86XT4 487 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 C4orf32Q8N8J7 132 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 SMARCE1Q969G3 411 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 PBXIP1Q96AQ6 731 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 CALML4Q96GE6 196 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 EPSTI1Q96J88 318 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 CDK5RAP3Q96JB5 506 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 POP1Q99575 1024 aaKnown RBP11.33□□□□□ -0.6
SS18-207ENST00000577636 C11orf84Q9BUA3 381 aaPredicted RBP11.33□□□□□ -0.6
SS18-207ENST00000577636 PANK2Q9BZ23 570 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 CUEDC2Q9H467 287 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 SERTAD1Q9UHV2 236 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 CD207Q9UJ71 328 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 TELO2Q9Y4R8 837 aa11.33□□□□□ -0.6
SS18-207ENST00000577636 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.32□□□□□ -0.6
SS18-207ENST00000577636 SMTNL1A8MU46 457 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 WNT7AO00755 349 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 ENPP3O14638 875 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 CHRNA1P02708 482 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 TXKP42681 527 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 NLRP12P59046 1061 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 GRIN1Q05586 938 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 NEDD9Q14511 834 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 CTC1Q2NKJ3 1217 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 GNPTABQ3T906 1256 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 SLFN12Q8IYM2 578 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 SAMD3Q8N6K7 520 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 TRIML1Q8N9V2 468 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 GPR20Q99678 358 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 LMAN2LQ9H0V9 348 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 DNAJC25Q9H1X3 360 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 MAGEF1Q9HAY2 307 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 MAP3K20Q9NYL2 800 aaKnown RBP11.32□□□□□ -0.6
SS18-207ENST00000577636 LRWD1Q9UFC0 647 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 ZNF215Q9UL58 517 aaPredicted RBP11.32□□□□□ -0.6
SS18-207ENST00000577636 STK24Q9Y6E0 443 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 KIAA1217Q5T5P2 1943 aa11.32□□□□□ -0.6
SS18-207ENST00000577636 MICAL3Q7RTP6 2002 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 MYO7AQ13402 2215 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 C5orf67F2Z3F1 127 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 MEIS2O14770 477 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 CAND2O75155 1236 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 TBX10O75333 385 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 TDP2O95551 362 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 MYL1P05976 194 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 MARK3P27448 753 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 FXR2P51116 673 aaKnown RBP eCLIP11.31□□□□□ -0.6
SS18-207ENST00000577636 PLCB2Q00722 1185 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 SMAD4Q13485 552 aaKnown RBP11.31□□□□□ -0.6
SS18-207ENST00000577636 PNOCQ13519 176 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms