RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 GNPTABQ3T906 1256 aa18.79■□□□□ 0.6
VPS53-218ENST00000575207 AASDHQ4L235 1098 aaPredicted RBP18.79■□□□□ 0.6
VPS53-218ENST00000575207 MAMSTRQ6ZN01 415 aa18.79■□□□□ 0.6
VPS53-218ENST00000575207 LURAP1LQ8IV03 231 aa18.79■□□□□ 0.6
VPS53-218ENST00000575207 INPP4AQ96PE3 977 aaPredicted RBP18.79■□□□□ 0.6
VPS53-218ENST00000575207 NELL2Q99435 816 aa18.79■□□□□ 0.6
VPS53-218ENST00000575207 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.79■□□□□ 0.6
VPS53-218ENST00000575207 PCDHA1Q9Y5I3 950 aa18.79■□□□□ 0.6
VPS53-218ENST00000575207 ADAMTS20P59510 1910 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 NCAM2O15394 837 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 RNF113AO15541 343 aaKnown RBP18.78■□□□□ 0.6
VPS53-218ENST00000575207 RPS6KA5O75582 802 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 FGRP09769 529 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 GOLGA8HP0CJ92 632 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 SPINK2P20155 84 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 CTDSPL2Q05D32 466 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 FOXC1Q12948 553 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 MTAPQ13126 283 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 SIM2Q14190 667 aaPredicted RBP18.78■□□□□ 0.6
VPS53-218ENST00000575207 QRICH1Q2TAL8 776 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 ODR4Q5SWX8 454 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 STPG1Q5TH74 334 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 PSAPL1Q6NUJ1 521 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 NME8Q8N427 588 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 KBTBD3Q8NAB2 608 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 SENP7Q9BQF6 1050 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 NOC2LQ9Y3T9 749 aaKnown RBP18.78■□□□□ 0.6
VPS53-218ENST00000575207 PCDHA2Q9Y5H9 948 aa18.78■□□□□ 0.6
VPS53-218ENST00000575207 LAMA4Q16363 1823 aa18.77■□□□□ 0.6
VPS53-218ENST00000575207 NCLP19338 710 aaKnown RBP18.77■□□□□ 0.6
VPS53-218ENST00000575207 MARK3P27448 753 aa18.77■□□□□ 0.6
VPS53-218ENST00000575207 TCF7P36402 384 aaPredicted RBP18.77■□□□□ 0.6
VPS53-218ENST00000575207 ALDH7A1P49419 539 aaKnown RBP18.77■□□□□ 0.6
VPS53-218ENST00000575207 METAP2P50579 478 aaKnown RBP eCLIP18.77■□□□□ 0.6
VPS53-218ENST00000575207 IGBP1P78318 339 aa18.77■□□□□ 0.6
VPS53-218ENST00000575207 FZD5Q13467 585 aa18.77■□□□□ 0.6
VPS53-218ENST00000575207 DDX53Q86TM3 631 aaKnown RBP18.77■□□□□ 0.6
VPS53-218ENST00000575207 ADGRF4Q8IZF3 695 aa18.77■□□□□ 0.6
VPS53-218ENST00000575207 SAMD3Q8N6K7 520 aa18.77■□□□□ 0.6
VPS53-218ENST00000575207 RPP25Q9BUL9 199 aaKnown RBP18.77■□□□□ 0.6
VPS53-218ENST00000575207 ST3GAL5Q9UNP4 418 aa18.77■□□□□ 0.6
VPS53-218ENST00000575207 DOCK5Q9H7D0 1870 aa18.77■□□□□ 0.6
VPS53-218ENST00000575207 NT5C1B-RDH14C9J2C7 533 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 FIBPO43427 364 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 STAM2O75886 525 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 ZFYP08048 801 aaPredicted RBP18.76■□□□□ 0.59
VPS53-218ENST00000575207 INSRRP14616 1297 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 CD72P21854 359 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 TARSP26639 723 aaKnown RBP18.76■□□□□ 0.59
VPS53-218ENST00000575207 BCAR1P56945 870 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 MRPS9P82933 396 aaKnown RBP18.76■□□□□ 0.59
VPS53-218ENST00000575207 SP4Q02446 784 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.76■□□□□ 0.59
VPS53-218ENST00000575207 PDZD3Q86UT5 571 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 ABI1Q8IZP0 508 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 ADAM32Q8TC27 787 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 TTC14Q96N46 770 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 CACNA2D2Q9NY47 1150 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 DACH1Q9UI36 760 aa18.76■□□□□ 0.59
VPS53-218ENST00000575207 CCDC195A0A1B0GUA6 201 aa18.75■□□□□ 0.59
VPS53-218ENST00000575207 GPR182O15218 404 aa18.75■□□□□ 0.59
VPS53-218ENST00000575207 PAPLNO95428 1278 aa18.75■□□□□ 0.59
VPS53-218ENST00000575207 DSC3Q14574 896 aa18.75■□□□□ 0.59
VPS53-218ENST00000575207 PPP2R5DQ14738 602 aa18.75■□□□□ 0.59
VPS53-218ENST00000575207 TMEM173Q86WV6 379 aaPredicted RBP18.75■□□□□ 0.59
VPS53-218ENST00000575207 TMEM40Q8WWA1 233 aa18.75■□□□□ 0.59
VPS53-218ENST00000575207 ANAPC4Q9UJX5 808 aa18.75■□□□□ 0.59
VPS53-218ENST00000575207 SMIM35A0A1B0GVV1 85 aa18.74■□□□□ 0.59
VPS53-218ENST00000575207 HRO43593 1189 aa18.74■□□□□ 0.59
VPS53-218ENST00000575207 KLRC2P26717 231 aa18.74■□□□□ 0.59
VPS53-218ENST00000575207 HOXA13P31271 388 aaPredicted RBP18.74■□□□□ 0.59
VPS53-218ENST00000575207 SCNM1Q9BWG6 230 aa18.74■□□□□ 0.59
VPS53-218ENST00000575207 EMILIN2Q9BXX0 1053 aa18.74■□□□□ 0.59
VPS53-218ENST00000575207 FAM217BQ9NTX9 383 aaPredicted RBP18.74■□□□□ 0.59
VPS53-218ENST00000575207 GREB1Q4ZG55 1949 aa18.74■□□□□ 0.59
VPS53-218ENST00000575207 TOP3BO95985 862 aaKnown RBP18.73■□□□□ 0.59
VPS53-218ENST00000575207 CNPP09543 421 aaKnown RBP18.73■□□□□ 0.59
VPS53-218ENST00000575207 ZNF806P0C7X5 589 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 CNR2P34972 360 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 PFKPQ01813 784 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 SF3A2Q15428 464 aaKnown RBP18.73■□□□□ 0.59
VPS53-218ENST00000575207 CCDC6Q16204 474 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 CLLU1OSQ5K130 101 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 C12orf50Q8NA57 414 aaPredicted RBP18.73■□□□□ 0.59
VPS53-218ENST00000575207 SEPT1Q8WYJ6 367 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 FGF14Q92915 247 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 BBC3Q96PG8 261 aaPredicted RBP18.73■□□□□ 0.59
VPS53-218ENST00000575207 SMARCAD1Q9H4L7 1026 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 CDHR5Q9HBB8 845 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 GPSM3Q9Y4H4 160 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 ZFP37Q9Y6Q3 630 aaPredicted RBP18.73■□□□□ 0.59
VPS53-218ENST00000575207 SDK1Q7Z5N4 2213 aa18.73■□□□□ 0.59
VPS53-218ENST00000575207 TENM4Q6N022 2769 aa18.72■□□□□ 0.59
VPS53-218ENST00000575207 GSTTP1A0A1W2PQM5 241 aa18.72■□□□□ 0.59
VPS53-218ENST00000575207 CARNS1A5YM72 827 aa18.72■□□□□ 0.59
VPS53-218ENST00000575207 NOVA1P51513 510 aaKnown RBP18.72■□□□□ 0.59
VPS53-218ENST00000575207 ST13P5Q8NFI4 369 aaPredicted RBP18.72■□□□□ 0.59
VPS53-218ENST00000575207 ZNF707Q96C28 371 aaPredicted RBP18.72■□□□□ 0.59
VPS53-218ENST00000575207 IGSF21Q96ID5 467 aa18.72■□□□□ 0.59
VPS53-218ENST00000575207 MAN1C1Q9NR34 630 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms