RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 B4GALT3O60512 393 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 OPHN1O60890 802 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 HMGCRP04035 888 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 PFKMP08237 780 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 USP10Q14694 798 aaKnown RBP6.55□□□□□ -1.36
NUP88-208ENST00000574087 GPR155Q7Z3F1 870 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 CMIPQ8IY22 773 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 RPUSD2Q8IZ73 545 aaKnown RBP6.55□□□□□ -1.36
NUP88-208ENST00000574087 FERMT2Q96AC1 680 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 AHCYL2Q96HN2 611 aaKnown RBP6.55□□□□□ -1.36
NUP88-208ENST00000574087 WNT8AQ9H1J5 351 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 ZCCHC4Q9H5U6 513 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 USP40Q9NVE5 1235 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 MAGEL2Q9UJ55 1249 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 PTPN22Q9Y2R2 807 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 DUSP10Q9Y6W6 482 aa6.55□□□□□ -1.36
NUP88-208ENST00000574087 ALG1L2C9J202 215 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 MAFGO15525 162 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 CLEC2LP0C7M8 214 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 STAT5BP51692 787 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 GUCY2FP51841 1108 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 BORAQ6PGQ7 559 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 LYSMD2Q8IV50 215 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 SLC41A1Q8IVJ1 513 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 KBTBD2Q8IY47 623 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 CNTD1Q8N815 330 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 NKD2Q969F2 451 aaPredicted RBP6.54□□□□□ -1.36
NUP88-208ENST00000574087 ACAP3Q96P50 834 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 ORAI2Q96SN7 254 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 MENTQ9BUN1 341 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 C14orf119Q9NWQ9 140 aa6.54□□□□□ -1.36
NUP88-208ENST00000574087 SAE1Q9UBE0 346 aaPredicted RBP6.54□□□□□ -1.36
NUP88-208ENST00000574087 WASHC2CQ9Y4E1 1318 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 hCG_2014768A0A024R1R8 64 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 A0A0A6YYK5 440 aaPredicted RBP6.53□□□□□ -1.36
NUP88-208ENST00000574087 ST20-MTHFSA0A0A6YYL1 179 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 GOLGA8AA7E2F4 631 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 GOLGA8BA8MQT2 603 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 PCDH8O95206 1070 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 MTMR1Q13613 665 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 PCOLCEQ15113 449 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 FSCN1Q16658 493 aaKnown RBP6.53□□□□□ -1.36
NUP88-208ENST00000574087 CT83Q5H943 113 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 PITRM1Q5JRX3 1037 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 FRMD5Q7Z6J6 570 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 RALYLQ86SE5 291 aaKnown RBP6.53□□□□□ -1.36
NUP88-208ENST00000574087 ZDHHC14Q8IZN3 488 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 LGI4Q8N135 537 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 DYDC2Q96IM9 177 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 NOL10Q9BSC4 688 aaKnown RBP6.53□□□□□ -1.36
NUP88-208ENST00000574087 SOX7Q9BT81 388 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 PRDM12Q9H4Q4 367 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 VWA7Q9Y334 891 aa6.53□□□□□ -1.36
NUP88-208ENST00000574087 B4GALT4O60513 344 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 INHBBP09529 407 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 ENPP1P22413 925 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 MRE11P49959 708 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 RRADP55042 308 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 SCAND1P57086 179 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 FAM50AQ14320 339 aaKnown RBP6.52□□□□□ -1.37
NUP88-208ENST00000574087 INAVAQ3KP66 663 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 ZFYVE27Q5T4F4 411 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 CCDC62Q6P9F0 684 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 RTKN2Q8IZC4 609 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 CDYL2Q8N8U2 506 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 PPP1R14CQ8TAE6 165 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 POLR3BQ9NW08 1133 aaPredicted RBP6.52□□□□□ -1.37
NUP88-208ENST00000574087 INVSQ9Y283 1065 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 PCDHB6Q9Y5E3 794 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 SLC4A7Q9Y6M7 1214 aa6.52□□□□□ -1.37
NUP88-208ENST00000574087 KATNA1O75449 491 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 CELA3BP08861 270 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 GPR3P46089 330 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 GPR15P49685 360 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 IGBP1P78318 339 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 TRIM25Q14258 630 aaKnown RBP6.51□□□□□ -1.37
NUP88-208ENST00000574087 TBR1Q16650 682 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 UGT8Q16880 541 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 ZMAT1Q5H9K5 638 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 AGBL4Q5VU57 503 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 KLHDC10Q6PID8 442 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 PLEKHH3Q7Z736 793 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 CBARPQ8N350 705 aaPredicted RBP6.51□□□□□ -1.37
NUP88-208ENST00000574087 RSAD2Q8WXG1 361 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 EAF2Q96CJ1 260 aaPredicted RBP6.51□□□□□ -1.37
NUP88-208ENST00000574087 HIST1H2AHQ96KK5 128 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 HIST1H2AJQ99878 128 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 KIAA1683Q9H0B3 1180 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 HOMER2Q9NSB8 354 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.51□□□□□ -1.37
NUP88-208ENST00000574087 PRSS50Q9UI38 385 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 SYNPO2Q9UMS6 1093 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 USP18Q9UMW8 372 aa6.51□□□□□ -1.37
NUP88-208ENST00000574087 CTDP1Q9Y5B0 961 aaPredicted RBP6.51□□□□□ -1.37
NUP88-208ENST00000574087 CNOT4O95628 575 aaKnown RBP6.5□□□□□ -1.37
NUP88-208ENST00000574087 LPLP06858 475 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 HOXA5P20719 270 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 CNR2P34972 360 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 MEOX1P50221 254 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 SESN2P58004 480 aaPredicted RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms