RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 IGKV6-21A0A0C4DH24 114 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 CCDC196A0A1B0GTZ2 297 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 TMEM150BA6NC51 233 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 WDR64B1ANS9 1081 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 GPR182O15218 404 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 EIF5BO60841 1220 aaKnown RBP7.6□□□□□ -1.19
VPS53-213ENST00000572334 PSMD10O75832 226 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 OATP04181 439 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 PSAPP07602 524 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 IBSPP21815 317 aaPredicted RBP7.6□□□□□ -1.19
VPS53-213ENST00000572334 FGFR4P22455 802 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 CYP3A7P24462 503 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 GNA11P29992 359 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 PBX3P40426 434 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 NDUFV1P49821 464 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 GPC3P51654 580 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 USP11P51784 963 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 PLCB3Q01970 1234 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 PRKCEQ02156 737 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 UBE3AQ05086 875 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 DUSP6Q16828 381 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 MCTP2Q6DN12 878 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 EFCAB12Q6NXP0 572 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 FAM43BQ6ZT52 329 aaPredicted RBP7.6□□□□□ -1.19
VPS53-213ENST00000572334 HFE2Q6ZVN8 426 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 METTL13Q8N6R0 699 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 ETNPPLQ8TBG4 499 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 SUSD6Q92537 303 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 CCDC136Q96JN2 1154 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 AIFM3Q96NN9 605 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 LARP6Q9BRS8 491 aaKnown RBP7.6□□□□□ -1.19
VPS53-213ENST00000572334 SLC26A6Q9BXS9 759 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 S1PR5Q9H228 398 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 ZSWIM6Q9HCJ5 1215 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 DISC1Q9NRI5 854 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 LRFN2Q9ULH4 789 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 FAM50BQ9Y247 325 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 TDRD15B5MCY1 1934 aaKnown RBP7.6□□□□□ -1.19
VPS53-213ENST00000572334 MTCL1Q9Y4B5 1905 aaKnown RBP7.6□□□□□ -1.19
VPS53-213ENST00000572334 PLXNA3P51805 1871 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 TRIP11Q15643 1979 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 DENND3A2RUS2 1198 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 HIDE1A8MVS5 230 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 MAGEB2O15479 319 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 DTNBO60941 627 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 CSDE1O75534 798 aaKnown RBP7.59□□□□□ -1.19
VPS53-213ENST00000572334 TDP2O95551 362 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 DARSP14868 501 aaKnown RBP7.59□□□□□ -1.19
VPS53-213ENST00000572334 EIF4BP23588 611 aaKnown RBP7.59□□□□□ -1.19
VPS53-213ENST00000572334 Q4G0T1 1027 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 SYCE2Q6PIF2 218 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 TMEM184AQ6ZMB5 413 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 RUFY3Q7L099 469 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 ECHDC2Q86YB7 292 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 CKAP2LQ8IYA6 745 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 FEZF2Q8TBJ5 459 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 TBCKQ8TEA7 893 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 CCDC12Q8WUD4 166 aaPredicted RBP7.59□□□□□ -1.19
VPS53-213ENST00000572334 FAM167AQ96KS9 214 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 FBXL18Q96ME1 805 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 RIT2Q99578 217 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 SH2D3AQ9BRG2 576 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 NIFKQ9BYG3 293 aaKnown RBP7.59□□□□□ -1.19
VPS53-213ENST00000572334 TMEM117Q9H0C3 514 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 TLE6Q9H808 572 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 ATP6V0A4Q9HBG4 840 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 SH3GLB2Q9NR46 395 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 TLR9Q9NR96 1032 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 CDH22Q9UJ99 828 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 PCDHA4Q9UN74 947 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 CEP131Q9UPN4 1083 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 LZTS1Q9Y250 596 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 USP15Q9Y4E8 981 aaPredicted RBP7.59□□□□□ -1.19
VPS53-213ENST00000572334 PCDHB12Q9Y5F1 795 aa7.59□□□□□ -1.19
VPS53-213ENST00000572334 A0A0U1RQF3 1178 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 MEIS3P2A8K0S8 358 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 EML1O00423 815 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 CHMP2AO43633 222 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 SLC37A4O43826 429 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 B4GALT3O60512 393 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 GAS7O60861 476 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 FGD1P98174 961 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 ODR4Q5SWX8 454 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 LRCH2Q5VUJ6 765 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 PLPP4Q5VZY2 271 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 KCNT2Q6UVM3 1135 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 ANO5Q75V66 913 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 TMEM173Q86WV6 379 aaPredicted RBP7.58□□□□□ -1.2
VPS53-213ENST00000572334 THNSL1Q8IYQ7 743 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 SLC39A11Q8N1S5 342 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 ZNF579Q8NAF0 562 aaKnown RBP7.58□□□□□ -1.2
VPS53-213ENST00000572334 DAGLBQ8NCG7 672 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 CCDC148Q8NFR7 591 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 BICD2Q8TD16 824 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 MRPS27Q92552 414 aaKnown RBP7.58□□□□□ -1.2
VPS53-213ENST00000572334 EDAQ92838 391 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 ZNF274Q96GC6 653 aaPredicted RBP7.58□□□□□ -1.2
VPS53-213ENST00000572334 POP1Q99575 1024 aaKnown RBP7.58□□□□□ -1.2
VPS53-213ENST00000572334 PPP4R2Q9NY27 417 aa7.58□□□□□ -1.2
VPS53-213ENST00000572334 WRAP73Q9P2S5 460 aaPredicted RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms