RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 IRS4O14654 1257 aaPredicted RBP7.24□□□□□ -1.25
VPS53-212ENST00000572259 VAMP4O75379 141 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 KATNA1O75449 491 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 RFPL3O75679 317 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 SSTR4P31391 388 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 HTR3AP46098 478 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 PCBP3P57721 371 aaKnown RBP7.24□□□□□ -1.25
VPS53-212ENST00000572259 SLC10A5Q5PT55 438 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 FAM83BQ5T0W9 1011 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 LCE3BQ5TA77 95 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 NLRP10Q86W26 655 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 ZNF227Q86WZ6 799 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 CPXCR1Q8N123 301 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 ZNF513Q8N8E2 541 aaPredicted RBP7.24□□□□□ -1.25
VPS53-212ENST00000572259 ENAHQ8N8S7 591 aaPredicted RBP7.24□□□□□ -1.25
VPS53-212ENST00000572259 CCDC191Q8NCU4 936 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 NEUROD6Q96NK8 337 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 IPO9Q96P70 1041 aaKnown RBP7.24□□□□□ -1.25
VPS53-212ENST00000572259 CDC5LQ99459 802 aaKnown RBP7.24□□□□□ -1.25
VPS53-212ENST00000572259 LGR4Q9BXB1 951 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 ATP13A1Q9HD20 1204 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 GTF2A1LQ9UNN4 478 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 ANKRD31Q8N7Z5 1873 aa7.24□□□□□ -1.25
VPS53-212ENST00000572259 ANKRD36CQ5JPF3 1778 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 DLEC1Q9Y238 1755 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 PI4KAP2A4QPH2 592 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 SLC26A4O43511 780 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 NTSR2O95665 410 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 NBPF7P0C2Y1 421 aaPredicted RBP7.23□□□□□ -1.25
VPS53-212ENST00000572259 TRIM27P14373 513 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 AMPD2Q01433 879 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 BNIP3Q12983 259 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 GRB10Q13322 594 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 IKZF1Q13422 519 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 PICALMQ13492 652 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 SIM2Q14190 667 aaPredicted RBP7.23□□□□□ -1.25
VPS53-212ENST00000572259 C21orf62-AS1Q17RA5 79 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 MSMPQ1L6U9 139 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 CRTC3Q6UUV7 619 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 DDX46Q7L014 1031 aaKnown RBP7.23□□□□□ -1.25
VPS53-212ENST00000572259 PASD1Q8IV76 773 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 TRIM59Q8IWR1 403 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 RTKN2Q8IZC4 609 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 PI4KAP1Q8N8J0 262 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 SNRNP27Q8WVK2 155 aaKnown RBP7.23□□□□□ -1.25
VPS53-212ENST00000572259 CHMP4CQ96CF2 233 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 CRAMP1Q96RY5 1269 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 CDC6Q99741 560 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 MYD88Q99836 296 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 ISCA1Q9BUE6 129 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 CWC25Q9NXE8 425 aaPredicted RBP7.23□□□□□ -1.25
VPS53-212ENST00000572259 SLC5A6Q9Y289 635 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 KIAA1551Q9HCM1 1747 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 SBF1O95248 1867 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 CACNA1SQ13698 1873 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 UBN2Q6ZU65 1347 aa7.23□□□□□ -1.25
VPS53-212ENST00000572259 TRAV20A0A0B4J274 112 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 GSG1L2A8MUP6 293 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 BBOX1O75936 387 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 CD3EP07766 207 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 SYPP08247 313 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 CT47B1P0C2W7 299 aaPredicted RBP7.22□□□□□ -1.25
VPS53-212ENST00000572259 CTSKP43235 329 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 PPP2R2AP63151 447 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 SLFN5Q08AF3 891 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 DPY19L1Q2PZI1 675 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 CRY2Q49AN0 593 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 CCDC93Q567U6 631 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 ZC3H12BQ5HYM0 836 aaKnown RBP7.22□□□□□ -1.25
VPS53-212ENST00000572259 ANO1Q5XXA6 986 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 ZBTB38Q8NAP3 1195 aaPredicted RBP7.22□□□□□ -1.25
VPS53-212ENST00000572259 MRGPRX3Q96LB0 322 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 AARSD1Q9BTE6 412 aaKnown RBP7.22□□□□□ -1.25
VPS53-212ENST00000572259 RTFDC1Q9BY42 306 aaPredicted RBP7.22□□□□□ -1.25
VPS53-212ENST00000572259 FOXP3Q9BZS1 431 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 NGRNQ9NPE2 291 aaKnown RBP7.22□□□□□ -1.25
VPS53-212ENST00000572259 TCFL5Q9UL49 500 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 MAP3K2Q9Y2U5 619 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 ZNF521Q96K83 1311 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 SLX4Q8IY92 1834 aa7.22□□□□□ -1.25
VPS53-212ENST00000572259 RIC1Q4ADV7 1423 aa7.21□□□□□ -1.25
VPS53-212ENST00000572259 RFPL1O75677 317 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 FAM153BP0C7A2 387 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 VAV1P15498 845 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 BMP8BP34820 402 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 EGR3Q06889 387 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 PABPC4Q13310 644 aaKnown RBP eCLIP7.21□□□□□ -1.26
VPS53-212ENST00000572259 LONRF2Q1L5Z9 754 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 GAB4Q2WGN9 574 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 GTF2IRD2BQ6EKJ0 949 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 RNF111Q6ZNA4 994 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 GTF2IRD2Q86UP8 949 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 ZBTB46Q86UZ6 589 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 UBR7Q8N806 425 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 CCDC89Q8N998 374 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 ANKRD42Q8N9B4 389 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 BTN2A2Q8WVV5 523 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 DNAAF4Q8WXU2 420 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 HOOK2Q96ED9 719 aa7.21□□□□□ -1.26
VPS53-212ENST00000572259 FAM89AQ96GI7 184 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms