RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 BRD1O95696 1058 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 CPA1P15085 419 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 ADD1P35611 737 aaKnown RBP21.74■■□□□ 1.07
NUP88-203ENST00000572019 UGCGQ16739 394 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 ODR4Q5SWX8 454 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 ZNF746Q6NUN9 644 aaPredicted RBP21.74■■□□□ 1.07
NUP88-203ENST00000572019 EFCAB12Q6NXP0 572 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 TMEM173Q86WV6 379 aaPredicted RBP21.74■■□□□ 1.07
NUP88-203ENST00000572019 SLC39A11Q8N1S5 342 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 LRRC43Q8N309 656 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 GJA10Q969M2 543 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 LENG9Q96B70 501 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 RIPOR3Q96MK2 946 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 PRRX2Q99811 253 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 AKT3Q9Y243 479 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 C2orf16Q68DN1 1984 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 PTPRZ1P23471 2315 aaPredicted RBP21.73■■□□□ 1.07
NUP88-203ENST00000572019 C2orf71A6NGG8 1288 aa21.73■■□□□ 1.07
NUP88-203ENST00000572019 ST18O60284 1047 aa21.73■■□□□ 1.07
NUP88-203ENST00000572019 CLASP2O75122 1294 aaKnown RBP21.73■■□□□ 1.07
NUP88-203ENST00000572019 DRP2Q13474 957 aa21.73■■□□□ 1.07
NUP88-203ENST00000572019 PFKFB3Q16875 520 aaPredicted RBP21.73■■□□□ 1.07
NUP88-203ENST00000572019 PRR16Q569H4 304 aa21.73■■□□□ 1.07
NUP88-203ENST00000572019 TMC7Q7Z402 723 aa21.73■■□□□ 1.07
NUP88-203ENST00000572019 ZNF598Q86UK7 904 aaKnown RBP21.73■■□□□ 1.07
NUP88-203ENST00000572019 C12orf76Q8N812 135 aaPredicted RBP21.73■■□□□ 1.07
NUP88-203ENST00000572019 HELQQ8TDG4 1101 aa21.73■■□□□ 1.07
NUP88-203ENST00000572019 AUTS2Q8WXX7 1259 aa21.73■■□□□ 1.07
NUP88-203ENST00000572019 NGRNQ9NPE2 291 aaKnown RBP21.73■■□□□ 1.07
NUP88-203ENST00000572019 SPG21Q9NZD8 308 aa21.73■■□□□ 1.07
NUP88-203ENST00000572019 PUF60Q9UHX1 559 aaKnown RBP21.73■■□□□ 1.07
NUP88-203ENST00000572019 SPTBN4Q9H254 2564 aa21.72■■□□□ 1.07
NUP88-203ENST00000572019 hCG_1984214I3L0E3 225 aa21.72■■□□□ 1.07
NUP88-203ENST00000572019 ASGR2P07307 311 aa21.72■■□□□ 1.07
NUP88-203ENST00000572019 EIF4BP23588 611 aaKnown RBP21.72■■□□□ 1.07
NUP88-203ENST00000572019 METAP2P50579 478 aaKnown RBP eCLIP21.72■■□□□ 1.07
NUP88-203ENST00000572019 DHX32Q7L7V1 743 aaKnown RBP21.72■■□□□ 1.07
NUP88-203ENST00000572019 ZBTB33Q86T24 672 aa21.72■■□□□ 1.07
NUP88-203ENST00000572019 ZNF713Q8N859 430 aaPredicted RBP21.72■■□□□ 1.07
NUP88-203ENST00000572019 TMEM105Q8N8V8 129 aa21.72■■□□□ 1.07
NUP88-203ENST00000572019 MRPL43Q8N983 215 aaKnown RBP21.72■■□□□ 1.07
NUP88-203ENST00000572019 ATOH1Q92858 354 aaPredicted RBP21.72■■□□□ 1.07
NUP88-203ENST00000572019 PCDHA10Q9Y5I2 948 aa21.72■■□□□ 1.07
NUP88-203ENST00000572019 FSD2A1L4K1 749 aa21.71■■□□□ 1.07
NUP88-203ENST00000572019 SRGAP2BP0DMP2 458 aa21.71■■□□□ 1.07
NUP88-203ENST00000572019 GPC3P51654 580 aa21.71■■□□□ 1.07
NUP88-203ENST00000572019 TEX2Q8IWB9 1127 aa21.71■■□□□ 1.07
NUP88-203ENST00000572019 ZMYND12Q9H0C1 365 aa21.71■■□□□ 1.07
NUP88-203ENST00000572019 ADAM7Q9H2U9 754 aa21.71■■□□□ 1.07
NUP88-203ENST00000572019 TBC1D22BQ9NU19 505 aa21.71■■□□□ 1.07
NUP88-203ENST00000572019 RNF216Q9NWF9 866 aaPredicted RBP21.71■■□□□ 1.07
NUP88-203ENST00000572019 RIF1Q5UIP0 2472 aaKnown RBP21.7■■□□□ 1.06
NUP88-203ENST00000572019 TMEM150BA6NC51 233 aa21.7■■□□□ 1.06
NUP88-203ENST00000572019 PSAPP07602 524 aa21.7■■□□□ 1.06
NUP88-203ENST00000572019 DARSP14868 501 aaKnown RBP21.7■■□□□ 1.06
NUP88-203ENST00000572019 HOXB8P17481 243 aaPredicted RBP21.7■■□□□ 1.06
NUP88-203ENST00000572019 PRKCEQ02156 737 aa21.7■■□□□ 1.06
NUP88-203ENST00000572019 LONRF3Q496Y0 759 aa21.7■■□□□ 1.06
NUP88-203ENST00000572019 SMAP1Q8IYB5 467 aaPredicted RBP21.7■■□□□ 1.06
NUP88-203ENST00000572019 ABI1Q8IZP0 508 aa21.7■■□□□ 1.06
NUP88-203ENST00000572019 BCL7CQ8WUZ0 217 aaPredicted RBP21.7■■□□□ 1.06
NUP88-203ENST00000572019 CASP10Q92851 521 aa21.7■■□□□ 1.06
NUP88-203ENST00000572019 NAP1L2Q9ULW6 460 aaPredicted RBP21.7■■□□□ 1.06
NUP88-203ENST00000572019 DMDP11532 3685 aa21.7■■□□□ 1.06
NUP88-203ENST00000572019 FAM186AA6NE01 2351 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 VPS13AQ96RL7 3174 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 ESYT2A0FGR8 921 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 MEIS3P2A8K0S8 358 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 MAGEB2O15479 319 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 HOXA2O43364 376 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 OATP04181 439 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 ZSCAN20P17040 1043 aaPredicted RBP21.69■■□□□ 1.06
NUP88-203ENST00000572019 PPM1AP35813 382 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 BCAR1P56945 870 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 KRT17Q04695 432 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 SMC1AQ14683 1233 aaKnown RBP21.69■■□□□ 1.06
NUP88-203ENST00000572019 RARS2Q5T160 578 aaKnown RBP21.69■■□□□ 1.06
NUP88-203ENST00000572019 FAM43BQ6ZT52 329 aaPredicted RBP21.69■■□□□ 1.06
NUP88-203ENST00000572019 ASCL5Q7RTU5 278 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 LPPQ93052 612 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 MAP7D2Q96T17 732 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 SH2D3AQ9BRG2 576 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 SAMM50Q9Y512 469 aa21.69■■□□□ 1.06
NUP88-203ENST00000572019 A0A0U1RQF3 1178 aa21.68■■□□□ 1.06
NUP88-203ENST00000572019 B4GALT3O60512 393 aa21.68■■□□□ 1.06
NUP88-203ENST00000572019 EPCAMP16422 314 aa21.68■■□□□ 1.06
NUP88-203ENST00000572019 CIITAP33076 1130 aa21.68■■□□□ 1.06
NUP88-203ENST00000572019 SETQ01105 290 aaPredicted RBP21.68■■□□□ 1.06
NUP88-203ENST00000572019 REXO1Q8N1G1 1221 aaKnown RBP21.68■■□□□ 1.06
NUP88-203ENST00000572019 GLT8D2Q9H1C3 349 aa21.68■■□□□ 1.06
NUP88-203ENST00000572019 CEP131Q9UPN4 1083 aa21.68■■□□□ 1.06
NUP88-203ENST00000572019 SORCS3Q9UPU3 1222 aa21.68■■□□□ 1.06
NUP88-203ENST00000572019 MSH4O15457 936 aa21.67■■□□□ 1.06
NUP88-203ENST00000572019 GALR2O43603 387 aaPredicted RBP21.67■■□□□ 1.06
NUP88-203ENST00000572019 CHMP2AO43633 222 aa21.67■■□□□ 1.06
NUP88-203ENST00000572019 CA8P35219 290 aa21.67■■□□□ 1.06
NUP88-203ENST00000572019 MTMR3Q13615 1198 aa21.67■■□□□ 1.06
NUP88-203ENST00000572019 PHKBQ93100 1093 aa21.67■■□□□ 1.06
NUP88-203ENST00000572019 CEP89Q96ST8 783 aa21.67■■□□□ 1.06
NUP88-203ENST00000572019 VN1R3Q9BXE9 311 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms