RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PCYT2Q99447 389 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 EMILIN2Q9BXX0 1053 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 JADE2Q9NQC1 790 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 FNDC1Q4ZHG4 1894 aaPredicted RBP12.63□□□□□ -0.39
VPS53-207ENST00000570510 ACACBO00763 2458 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 DCDC2BA2VCK2 349 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 KRBA1A5PL33 1030 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 MEIS2O14770 477 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 SDSP20132 328 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 KIF5BP33176 963 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 POLGP54098 1239 aaPredicted RBP12.62□□□□□ -0.39
VPS53-207ENST00000570510 LMNB2Q03252 620 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 WTAPQ15007 396 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 SEC23AQ15436 765 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 ZNF484Q5JVG2 852 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 TRMT1LQ7Z2T5 733 aaKnown RBP12.62□□□□□ -0.39
VPS53-207ENST00000570510 RSAD2Q8WXG1 361 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 BORCS6Q96GS4 357 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 ZBP1Q9H171 429 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 USP18Q9UMW8 372 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 UBIAD1Q9Y5Z9 338 aa12.62□□□□□ -0.39
VPS53-207ENST00000570510 LAMTOR5O43504 91 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 VTNP04004 478 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 CTSAP10619 480 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 SRFP11831 508 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 RNASELQ05823 741 aaKnown RBP12.61□□□□□ -0.39
VPS53-207ENST00000570510 MAPK8IP2Q13387 824 aaPredicted RBP12.61□□□□□ -0.39
VPS53-207ENST00000570510 PTPN14Q15678 1187 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 PHLDB3Q6NSJ2 640 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 PDXDC2PQ6P474 469 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 C15orf39Q6ZRI6 1047 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 ECHDC2Q86YB7 292 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 SMC5Q8IY18 1101 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 SUMF1Q8NBK3 374 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 CTCFLQ8NI51 663 aaPredicted RBP12.61□□□□□ -0.39
VPS53-207ENST00000570510 NXPE3Q969Y0 559 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 SHDQ96IW2 340 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 MAP7D2Q96T17 732 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 RTKNQ9BST9 563 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 DSCC1Q9BVC3 393 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 ARHGEF3Q9NR81 526 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 KCNH7Q9NS40 1196 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 SPATA6Q9NWH7 488 aaPredicted RBP12.61□□□□□ -0.39
VPS53-207ENST00000570510 DPP7Q9UHL4 492 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 TCEAL9Q9UHQ7 104 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 AKT3Q9Y243 479 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 IRAK3Q9Y616 596 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 FRYLO94915 3013 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 SALL3Q9BXA9 1300 aa12.61□□□□□ -0.39
VPS53-207ENST00000570510 CEP250Q9BV73 2442 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 COL1A2P08123 1366 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 KMT2BQ9UMN6 2715 aaPredicted RBP12.6□□□□□ -0.39
VPS53-207ENST00000570510 SPTLC1O15269 473 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 SSBP05455 408 aaKnown RBP eCLIP12.6□□□□□ -0.39
VPS53-207ENST00000570510 TMOD1P28289 359 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 DMWDQ09019 674 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 DSC3Q14574 896 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 SLC35G1Q2M3R5 365 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 CLLU1OSQ5K130 101 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 DCLRE1AQ6PJP8 1040 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 RALYLQ86SE5 291 aaKnown RBP12.6□□□□□ -0.39
VPS53-207ENST00000570510 DDX53Q86TM3 631 aaKnown RBP12.6□□□□□ -0.39
VPS53-207ENST00000570510 SLC44A3Q8N4M1 653 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 GPR152Q8TDT2 470 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 SLC22A17Q8WUG5 538 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 BCO2Q9BYV7 579 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 DACT1Q9NYF0 836 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 STK39Q9UEW8 545 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 NFASCO94856 1347 aa12.6□□□□□ -0.39
VPS53-207ENST00000570510 ZFHX4Q86UP3 3567 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 DDX39AO00148 427 aaKnown RBP12.59□□□□□ -0.39
VPS53-207ENST00000570510 HIP1O00291 1037 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 ZNF76P36508 570 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 NLRP11P59045 1033 aaKnown RBP12.59□□□□□ -0.39
VPS53-207ENST00000570510 UBE2SQ16763 222 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 CYB5R4Q7L1T6 521 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 IGSF21Q96ID5 467 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 MXRA8Q9BRK3 442 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 GBP3Q9H0R5 595 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 PIDD1Q9HB75 910 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 ZNF302Q9NR11 478 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 RNF19AQ9NV58 838 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 GMEB2Q9UKD1 530 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 PCDHA6Q9UN73 950 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 PCDHA8Q9Y5H6 950 aa12.59□□□□□ -0.39
VPS53-207ENST00000570510 LOXHD1Q8IVV2 1947 aa12.58□□□□□ -0.39
VPS53-207ENST00000570510 A0A0U1RQF3 1178 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 CCDC195A0A1B0GUA6 201 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 EIF4BP23588 611 aaKnown RBP12.58□□□□□ -0.4
VPS53-207ENST00000570510 CSTF1Q05048 431 aaKnown RBP12.58□□□□□ -0.4
VPS53-207ENST00000570510 TROAPQ12815 778 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 ZNF528Q3MIS6 628 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 SWSAP1Q6NVH7 229 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 MIS18BP1Q6P0N0 1132 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 GLB1LQ6UWU2 654 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 ZNF710Q8N1W2 664 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 PJA1Q8NG27 643 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 RSPH1Q8WYR4 309 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 LZTS2Q9BRK4 669 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 SPZ1Q9BXG8 430 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms