RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 N4BP1O75113 896 aaKnown RBP20.7■□□□□ 0.9
CLK3-227ENST00000570296 GLULP15104 373 aa20.7■□□□□ 0.9
CLK3-227ENST00000570296 ITGB5P18084 799 aa20.7■□□□□ 0.9
CLK3-227ENST00000570296 CRYBB1P53674 252 aaPredicted RBP20.7■□□□□ 0.9
CLK3-227ENST00000570296 MTMR1Q13613 665 aa20.7■□□□□ 0.9
CLK3-227ENST00000570296 GPR152Q8TDT2 470 aa20.7■□□□□ 0.9
CLK3-227ENST00000570296 ATRIPQ8WXE1 791 aa20.7■□□□□ 0.9
CLK3-227ENST00000570296 AUTS2Q8WXX7 1259 aa20.7■□□□□ 0.9
CLK3-227ENST00000570296 MRPL9Q9BYD2 267 aaKnown RBP20.7■□□□□ 0.9
CLK3-227ENST00000570296 EPC1Q9H2F5 836 aa20.7■□□□□ 0.9
CLK3-227ENST00000570296 SMG5Q9UPR3 1016 aaKnown RBP20.7■□□□□ 0.9
CLK3-227ENST00000570296 KLRC1P26715 233 aa20.69■□□□□ 0.9
CLK3-227ENST00000570296 METAP2P50579 478 aaKnown RBP eCLIP20.69■□□□□ 0.9
CLK3-227ENST00000570296 BCAR1P56945 870 aa20.69■□□□□ 0.9
CLK3-227ENST00000570296 DMWDQ09019 674 aa20.69■□□□□ 0.9
CLK3-227ENST00000570296 PPM1JQ5JR12 505 aa20.69■□□□□ 0.9
CLK3-227ENST00000570296 CLLU1OSQ5K130 101 aa20.69■□□□□ 0.9
CLK3-227ENST00000570296 DDX53Q86TM3 631 aaKnown RBP20.69■□□□□ 0.9
CLK3-227ENST00000570296 STAMQ92783 540 aa20.69■□□□□ 0.9
CLK3-227ENST00000570296 USP18Q9UMW8 372 aa20.69■□□□□ 0.9
CLK3-227ENST00000570296 MAFGO15525 162 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 TGM1P22735 817 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 GBP2P32456 591 aaPredicted RBP20.68■□□□□ 0.9
CLK3-227ENST00000570296 SLC26A2P50443 739 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 STAT5BP51692 787 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 MFAP1P55081 439 aaKnown RBP20.68■□□□□ 0.9
CLK3-227ENST00000570296 NMIQ13287 307 aaPredicted RBP20.68■□□□□ 0.9
CLK3-227ENST00000570296 DCLRE1AQ6PJP8 1040 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 USP17L6PQ6QN14 398 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 ECHDC2Q86YB7 292 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 CMASQ8NFW8 434 aaPredicted RBP20.68■□□□□ 0.9
CLK3-227ENST00000570296 SLC2A4RGQ9NR83 387 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 PKD2L1Q9P0L9 805 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 SLC9A2Q9UBY0 812 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 SALL3Q9BXA9 1300 aa20.68■□□□□ 0.9
CLK3-227ENST00000570296 NT5C1B-RDH14C9J2C7 533 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 LAMTOR5O43504 91 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 CYTH3O43739 400 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 GRM4Q14833 912 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 PTPN14Q15678 1187 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 ZBTB44Q8NCP5 570 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 SHDQ96IW2 340 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 OSMRQ99650 979 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 RHOBTB2Q9BYZ6 727 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 FOXQ1Q9C009 403 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 KRT23Q9C075 422 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 UBIAD1Q9Y5Z9 338 aa20.67■□□□□ 0.9
CLK3-227ENST00000570296 ASPMQ8IZT6 3477 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 MEIS2O14770 477 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 ZSCAN20P17040 1043 aaPredicted RBP20.66■□□□□ 0.9
CLK3-227ENST00000570296 CLCN4P51793 760 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 STARD6P59095 220 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 SEC23AQ15436 765 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 KIZQ2M2Z5 673 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 CYP26C1Q6V0L0 522 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 RSPH1Q8WYR4 309 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 BCO2Q9BYV7 579 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 WDR6Q9NNW5 1121 aaKnown RBP20.66■□□□□ 0.9
CLK3-227ENST00000570296 SPATA6Q9NWH7 488 aaPredicted RBP20.66■□□□□ 0.9
CLK3-227ENST00000570296 ZSCAN32Q9NX65 697 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 COL1A2P08123 1366 aa20.66■□□□□ 0.9
CLK3-227ENST00000570296 SLC30A4O14863 429 aa20.65■□□□□ 0.9
CLK3-227ENST00000570296 TBC1D4O60343 1298 aa20.65■□□□□ 0.9
CLK3-227ENST00000570296 LILRB5O75023 590 aa20.65■□□□□ 0.9
CLK3-227ENST00000570296 TMEM173Q86WV6 379 aaPredicted RBP20.65■□□□□ 0.9
CLK3-227ENST00000570296 NETO1Q8TDF5 533 aa20.65■□□□□ 0.9
CLK3-227ENST00000570296 HELQQ8TDG4 1101 aa20.65■□□□□ 0.9
CLK3-227ENST00000570296 IGSF21Q96ID5 467 aa20.65■□□□□ 0.9
CLK3-227ENST00000570296 EMILIN2Q9BXX0 1053 aa20.65■□□□□ 0.9
CLK3-227ENST00000570296 CNNM2Q9H8M5 875 aa20.65■□□□□ 0.9
CLK3-227ENST00000570296 JADE2Q9NQC1 790 aa20.65■□□□□ 0.9
CLK3-227ENST00000570296 SH2B1Q9NRF2 756 aaPredicted RBP20.65■□□□□ 0.9
CLK3-227ENST00000570296 FRYQ5TBA9 3013 aa20.64■□□□□ 0.9
CLK3-227ENST00000570296 CLUHO75153 1309 aa20.64■□□□□ 0.89
CLK3-227ENST00000570296 HBP1O60381 514 aa20.64■□□□□ 0.89
CLK3-227ENST00000570296 ACTR2P61160 394 aa20.64■□□□□ 0.89
CLK3-227ENST00000570296 CSTF1Q05048 431 aaKnown RBP20.64■□□□□ 0.89
CLK3-227ENST00000570296 RNF169Q8NCN4 708 aa20.64■□□□□ 0.89
CLK3-227ENST00000570296 PARD6AQ9NPB6 346 aa20.64■□□□□ 0.89
CLK3-227ENST00000570296 STK39Q9UEW8 545 aa20.64■□□□□ 0.89
CLK3-227ENST00000570296 GMEB2Q9UKD1 530 aa20.64■□□□□ 0.89
CLK3-227ENST00000570296 ANGPTL2Q9UKU9 493 aa20.64■□□□□ 0.89
CLK3-227ENST00000570296 NFASCO94856 1347 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 LRRN2O75325 713 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 GPR32O75388 356 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 KLRC2P26717 231 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 MAGEA9P43362 315 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 COL9A3Q14050 684 aaPredicted RBP20.63■□□□□ 0.89
CLK3-227ENST00000570296 ZNF598Q86UK7 904 aaKnown RBP20.63■□□□□ 0.89
CLK3-227ENST00000570296 NELL1Q92832 810 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 KLHL5Q96PQ7 755 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 MYADMQ96S97 322 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 PPP1R16BQ96T49 567 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 ZZEF1O43149 2961 aa20.63■□□□□ 0.89
CLK3-227ENST00000570296 A0A0U1RQF3 1178 aa20.62■□□□□ 0.89
CLK3-227ENST00000570296 ZC3H11AO75152 810 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLK3-227ENST00000570296 HNRNPUQ00839 825 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLK3-227ENST00000570296 WTAPQ15007 396 aa20.62■□□□□ 0.89
CLK3-227ENST00000570296 ZNF484Q5JVG2 852 aa20.62■□□□□ 0.89
CLK3-227ENST00000570296 SDF4Q9BRK5 362 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms