RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 CTTNQ14247 550 aaKnown RBP20.6■□□□□ 0.89
CLN3-237ENST00000569030 C4orf19Q8IY42 314 aa20.6■□□□□ 0.89
CLN3-237ENST00000569030 ZNF710Q8N1W2 664 aa20.6■□□□□ 0.89
CLN3-237ENST00000569030 CLP1Q92989 425 aaKnown RBP20.6■□□□□ 0.89
CLN3-237ENST00000569030 TTC12Q9H892 705 aaPredicted RBP20.6■□□□□ 0.89
CLN3-237ENST00000569030 DKC1O60832 514 aaKnown RBP eCLIP20.59■□□□□ 0.89
CLN3-237ENST00000569030 CSDE1O75534 798 aaKnown RBP20.59■□□□□ 0.89
CLN3-237ENST00000569030 STAG3L1P0CL83 205 aa20.59■□□□□ 0.89
CLN3-237ENST00000569030 DARSP14868 501 aaKnown RBP20.59■□□□□ 0.89
CLN3-237ENST00000569030 FGFR4P22455 802 aa20.59■□□□□ 0.89
CLN3-237ENST00000569030 MCM7P33993 719 aa20.59■□□□□ 0.89
CLN3-237ENST00000569030 BMPR1AP36894 532 aa20.59■□□□□ 0.89
CLN3-237ENST00000569030 CYP4A11Q02928 519 aa20.59■□□□□ 0.89
CLN3-237ENST00000569030 SKIV2LQ15477 1246 aaKnown RBP20.59■□□□□ 0.89
CLN3-237ENST00000569030 FAM43BQ6ZT52 329 aaPredicted RBP20.59■□□□□ 0.89
CLN3-237ENST00000569030 SLC24A5Q71RS6 500 aa20.59■□□□□ 0.89
CLN3-237ENST00000569030 FAM184AQ8NB25 1140 aa20.59■□□□□ 0.89
CLN3-237ENST00000569030 ATXN2LQ8WWM7 1075 aaKnown RBP20.59■□□□□ 0.89
CLN3-237ENST00000569030 NLRP7Q8WX94 980 aa20.59■□□□□ 0.89
CLN3-237ENST00000569030 EIF2AK1Q9BQI3 630 aaKnown RBP20.59■□□□□ 0.89
CLN3-237ENST00000569030 FOXP1Q9H334 677 aaPredicted RBP20.59■□□□□ 0.89
CLN3-237ENST00000569030 SUCLA2Q9P2R7 463 aaPredicted RBP20.59■□□□□ 0.89
CLN3-237ENST00000569030 LRFN2Q9ULH4 789 aa20.59■□□□□ 0.89
CLN3-237ENST00000569030 MRPL42Q9Y6G3 142 aaKnown RBP20.59■□□□□ 0.89
CLN3-237ENST00000569030 YWHABP31946 246 aaKnown RBP20.58■□□□□ 0.89
CLN3-237ENST00000569030 CTNNB1P35222 781 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 DNM2P50570 870 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 FAM189BP81408 668 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 TFF2Q03403 129 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 PAN2Q504Q3 1202 aaKnown RBP20.58■□□□□ 0.89
CLN3-237ENST00000569030 KSR1Q8IVT5 923 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 TPH2Q8IWU9 490 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 CMTR2Q8IYT2 770 aaKnown RBP20.58■□□□□ 0.89
CLN3-237ENST00000569030 CEP170P1Q96L14 293 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 SCLT1Q96NL6 688 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 HSD17B14Q9BPX1 270 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 ZSWIM4Q9H7M6 989 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 UPF2Q9HAU5 1272 aaKnown RBP20.58■□□□□ 0.89
CLN3-237ENST00000569030 C1orf112Q9NSG2 853 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 PCDHB7Q9Y5E2 793 aa20.58■□□□□ 0.89
CLN3-237ENST00000569030 A0A087WZ62 844 aa20.57■□□□□ 0.88
CLN3-237ENST00000569030 C5orf67F2Z3F1 127 aa20.57■□□□□ 0.88
CLN3-237ENST00000569030 ST18O60284 1047 aa20.57■□□□□ 0.88
CLN3-237ENST00000569030 ZNF174Q15697 407 aa20.57■□□□□ 0.88
CLN3-237ENST00000569030 FAM102BQ5T8I3 360 aa20.57■□□□□ 0.88
CLN3-237ENST00000569030 RHPN2Q8IUC4 686 aa20.57■□□□□ 0.88
CLN3-237ENST00000569030 MRPL38Q96DV4 380 aaKnown RBP20.57■□□□□ 0.88
CLN3-237ENST00000569030 TMX3Q96JJ7 454 aa20.57■□□□□ 0.88
CLN3-237ENST00000569030 TBC1D32Q96NH3 1257 aa20.57■□□□□ 0.88
CLN3-237ENST00000569030 ASB2Q96Q27 587 aa20.57■□□□□ 0.88
CLN3-237ENST00000569030 FDXACB1Q9BRP7 624 aaPredicted RBP20.57■□□□□ 0.88
CLN3-237ENST00000569030 DHX33Q9H6R0 707 aaKnown RBP20.57■□□□□ 0.88
CLN3-237ENST00000569030 PLXNA4Q9HCM2 1894 aa20.56■□□□□ 0.88
CLN3-237ENST00000569030 RB1P06400 928 aa20.56■□□□□ 0.88
CLN3-237ENST00000569030 MRPS5P82675 430 aaKnown RBP20.56■□□□□ 0.88
CLN3-237ENST00000569030 TJAP1Q5JTD0 557 aa20.56■□□□□ 0.88
CLN3-237ENST00000569030 TMEM143Q96AN5 459 aa20.56■□□□□ 0.88
CLN3-237ENST00000569030 GCOM2Q9BZD3 368 aaPredicted RBP20.56■□□□□ 0.88
CLN3-237ENST00000569030 BMP2KQ9NSY1 1161 aaPredicted RBP20.56■□□□□ 0.88
CLN3-237ENST00000569030 POTEMA6NI47 508 aa20.55■□□□□ 0.88
CLN3-237ENST00000569030 GRM6O15303 877 aa20.55■□□□□ 0.88
CLN3-237ENST00000569030 POLGP54098 1239 aaPredicted RBP20.55■□□□□ 0.88
CLN3-237ENST00000569030 CDC42EP1Q00587 391 aa20.55■□□□□ 0.88
CLN3-237ENST00000569030 XKR9Q5GH70 373 aa20.55■□□□□ 0.88
CLN3-237ENST00000569030 OTUD6AQ7L8S5 288 aa20.55■□□□□ 0.88
CLN3-237ENST00000569030 NOSTRINQ8IVI9 506 aa20.55■□□□□ 0.88
CLN3-237ENST00000569030 SLC7A3Q8WY07 619 aa20.55■□□□□ 0.88
CLN3-237ENST00000569030 JPH2Q9BR39 696 aaPredicted RBP20.55■□□□□ 0.88
CLN3-237ENST00000569030 RWDD3Q9Y3V2 267 aa20.55■□□□□ 0.88
CLN3-237ENST00000569030 MUC3AQ02505 3323 aa20.55■□□□□ 0.88
CLN3-237ENST00000569030 A0A087WWV3 80 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 LYPLA2O95372 231 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 FGFR1P11362 822 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 ZSCAN20P17040 1043 aaPredicted RBP20.54■□□□□ 0.88
CLN3-237ENST00000569030 U2AF2P26368 475 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN3-237ENST00000569030 RFC5P40937 340 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 NBR1Q14596 966 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 PTPROQ16827 1216 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 ZNF410Q86VK4 478 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 PRPF31Q8WWY3 499 aaKnown RBP20.54■□□□□ 0.88
CLN3-237ENST00000569030 NLRP4Q96MN2 994 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 IFT122Q9HBG6 1241 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 TMEM161AQ9NX61 479 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 PPME1Q9Y570 386 aa20.54■□□□□ 0.88
CLN3-237ENST00000569030 TBKBP1A7MCY6 615 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 SPATA31C1P0DKV0 1188 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 GNL2Q13823 731 aaKnown RBP20.53■□□□□ 0.88
CLN3-237ENST00000569030 EMC2Q15006 297 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 TTC38Q5R3I4 469 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 HLA-CQ95604 372 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 C11orf84Q9BUA3 381 aaPredicted RBP20.53■□□□□ 0.88
CLN3-237ENST00000569030 ELAC1Q9H777 363 aaKnown RBP20.53■□□□□ 0.88
CLN3-237ENST00000569030 ATP6V0A4Q9HBG4 840 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 ALG13Q9NP73 1137 aaKnown RBP20.53■□□□□ 0.88
CLN3-237ENST00000569030 RNF19AQ9NV58 838 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 RNF216Q9NWF9 866 aaPredicted RBP20.53■□□□□ 0.88
CLN3-237ENST00000569030 HCSTQ9UBK5 93 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 COG5Q9UP83 839 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 COL4A3BPQ9Y5P4 624 aa20.53■□□□□ 0.88
CLN3-237ENST00000569030 SRGAP2CP0DJJ0 459 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms