RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 CLP1Q92989 425 aaKnown RBP15.64■□□□□ 0.09
CLN3-235ENST00000568497 MBOAT7Q96N66 472 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 BRMS1Q9HCU9 246 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 GABBR1Q9UBS5 961 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 SAMM50Q9Y512 469 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 PSMD10O75832 226 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 HOXC8P31273 242 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 TOB1P50616 345 aaPredicted RBP15.63■□□□□ 0.09
CLN3-235ENST00000568497 SETQ01105 290 aaPredicted RBP15.63■□□□□ 0.09
CLN3-235ENST00000568497 CUL4AQ13619 759 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 CAMK1Q14012 370 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 SAFBQ15424 915 aaKnown RBP eCLIP15.63■□□□□ 0.09
CLN3-235ENST00000568497 FERMT3Q86UX7 667 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 GIMAP8Q8ND71 665 aaPredicted RBP15.63■□□□□ 0.09
CLN3-235ENST00000568497 LMBR1Q8WVP7 490 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 PPP1R16BQ96T49 567 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 PLVAPQ9BX97 442 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 TEKT3Q9BXF9 490 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 RC3H2Q9HBD1 1191 aaKnown RBP15.63■□□□□ 0.09
CLN3-235ENST00000568497 PLAGL2Q9UPG8 496 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 GVINP1Q7Z2Y8 2422 aa15.63■□□□□ 0.09
CLN3-235ENST00000568497 KAT6AQ92794 2004 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 K7ELQ4 463 aaPredicted RBP15.62■□□□□ 0.09
CLN3-235ENST00000568497 MAFGO15525 162 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 ZNF862O60290 1169 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 GLP2RO95838 553 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 INSRRP14616 1297 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 MCM2P49736 904 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 STAT5BP51692 787 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 TMEM62Q0P6H9 643 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 PPFIA1Q13136 1202 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 GNL2Q13823 731 aaKnown RBP15.62■□□□□ 0.09
CLN3-235ENST00000568497 PDXDC2PQ6P474 469 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 FAM173BQ6P4H8 233 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 DGLUCYQ7Z3D6 616 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 TMEM105Q8N8V8 129 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 ZNF668Q96K58 619 aaPredicted RBP15.62■□□□□ 0.09
CLN3-235ENST00000568497 FAM49AQ9H0Q0 323 aaPredicted RBP15.62■□□□□ 0.09
CLN3-235ENST00000568497 ZNF302Q9NR11 478 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 VAV3Q9UKW4 847 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 WDR81Q562E7 1941 aa15.62■□□□□ 0.09
CLN3-235ENST00000568497 VPS37CA5D8V6 355 aaPredicted RBP15.61■□□□□ 0.09
CLN3-235ENST00000568497 H3BQV1 296 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 MARCH6O60337 910 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 ATG7O95352 703 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 ITGB1P05556 798 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 ATF7P17544 494 aaPredicted RBP15.61■□□□□ 0.09
CLN3-235ENST00000568497 DNAJB1P25685 340 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 GRIK4Q16099 956 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 MARCH8Q5T0T0 291 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 LARP1BQ659C4 914 aaKnown RBP15.61■□□□□ 0.09
CLN3-235ENST00000568497 NCAPH2Q6IBW4 605 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 MIS18BP1Q6P0N0 1132 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 MIER3Q7Z3K6 550 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 CKAP2LQ8IYA6 745 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 P2RX5Q93086 422 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 SMARCAD1Q9H4L7 1026 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 KCNMB3Q9NPA1 279 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 DISC1Q9NRI5 854 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 RGL1Q9NZL6 768 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 WRAP73Q9P2S5 460 aaPredicted RBP15.61■□□□□ 0.09
CLN3-235ENST00000568497 PCDHB6Q9Y5E3 794 aa15.61■□□□□ 0.09
CLN3-235ENST00000568497 IGKV6D-21A0A0A0MT36 114 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 ZBTB39O15060 712 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 TXKP42681 527 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 NAALADL2Q58DX5 795 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 TTC38Q5R3I4 469 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 NOSTRINQ8IVI9 506 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 KREMEN2Q8NCW0 462 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 MICAL1Q8TDZ2 1067 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 POF1BQ8WVV4 589 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 ZNF689Q96CS4 500 aaPredicted RBP15.6■□□□□ 0.09
CLN3-235ENST00000568497 MFSD1Q9H3U5 465 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 AZI2Q9H6S1 392 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 TLE6Q9H808 572 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 TSHZ2Q9NRE2 1034 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 BMP2KQ9NSY1 1161 aaPredicted RBP15.6■□□□□ 0.09
CLN3-235ENST00000568497 TBC1D22BQ9NU19 505 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 ERAP1Q9NZ08 941 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 TCEAL9Q9UHQ7 104 aa15.6■□□□□ 0.09
CLN3-235ENST00000568497 ZNF215Q9UL58 517 aaPredicted RBP15.6■□□□□ 0.09
CLN3-235ENST00000568497 MYH9P35579 1960 aaKnown RBP15.6■□□□□ 0.09
CLN3-235ENST00000568497 GHRP10912 638 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 RBM10P98175 930 aaKnown RBP15.59■□□□□ 0.09
CLN3-235ENST00000568497 KRT76Q01546 638 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 CYP4A11Q02928 519 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 MTMR3Q13615 1198 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 CTTNQ14247 550 aaKnown RBP15.59■□□□□ 0.09
CLN3-235ENST00000568497 CALCRLQ16602 461 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 FAM26DQ5JW98 314 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 PLA2G4FQ68DD2 849 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 PPP4R3AQ6IN85 833 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 ZNF746Q6NUN9 644 aaPredicted RBP15.59■□□□□ 0.09
CLN3-235ENST00000568497 B3GNT9Q6UX72 402 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 TEX2Q8IWB9 1127 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 ZNF579Q8NAF0 562 aaKnown RBP15.59■□□□□ 0.09
CLN3-235ENST00000568497 KLHL23Q8NBE8 558 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 SPPL3Q8TCT6 385 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 DNAJB3Q8WWF6 145 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 RMDN1Q96DB5 314 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms