RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TRAPPC10P48553 1259 aa16.83■□□□□ 0.28
VPS39-210ENST00000568357 GPC3P51654 580 aa16.83■□□□□ 0.28
VPS39-210ENST00000568357 FAM228AQ86W67 206 aa16.83■□□□□ 0.28
VPS39-210ENST00000568357 SP7Q8TDD2 431 aaPredicted RBP16.83■□□□□ 0.28
VPS39-210ENST00000568357 CEP170P1Q96L14 293 aa16.83■□□□□ 0.28
VPS39-210ENST00000568357 SMC3Q9UQE7 1217 aa16.83■□□□□ 0.28
VPS39-210ENST00000568357 KIF3AQ9Y496 699 aa16.83■□□□□ 0.28
VPS39-210ENST00000568357 A0A087WWV3 80 aa16.82■□□□□ 0.28
VPS39-210ENST00000568357 POTEMA6NI47 508 aa16.82■□□□□ 0.28
VPS39-210ENST00000568357 GPR182O15218 404 aa16.82■□□□□ 0.28
VPS39-210ENST00000568357 EIF4BP23588 611 aaKnown RBP16.82■□□□□ 0.28
VPS39-210ENST00000568357 TECP42680 631 aa16.82■□□□□ 0.28
VPS39-210ENST00000568357 ERVK-21P61565 698 aa16.82■□□□□ 0.28
VPS39-210ENST00000568357 ORC2Q13416 577 aaPredicted RBP16.82■□□□□ 0.28
VPS39-210ENST00000568357 SKIV2LQ15477 1246 aaKnown RBP16.82■□□□□ 0.28
VPS39-210ENST00000568357 YME1L1Q96TA2 773 aa16.82■□□□□ 0.28
VPS39-210ENST00000568357 SUCLA2Q9P2R7 463 aaPredicted RBP16.82■□□□□ 0.28
VPS39-210ENST00000568357 MTUS1Q9ULD2 1270 aa16.82■□□□□ 0.28
VPS39-210ENST00000568357 PCDHB6Q9Y5E3 794 aa16.82■□□□□ 0.28
VPS39-210ENST00000568357 MYH9P35579 1960 aaKnown RBP16.81■□□□□ 0.28
VPS39-210ENST00000568357 LPXNO60711 386 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 LYPLA2O95372 231 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 OR52Z1P0C646 297 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 SPATA31C1P0DKV0 1188 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 DNM2P50570 870 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 CUL4AQ13619 759 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 AAK1Q2M2I8 961 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 XKR9Q5GH70 373 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 MCTP1Q6DN14 999 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 OTUD6AQ7L8S5 288 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 KSR1Q8IVT5 923 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 ZNF710Q8N1W2 664 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 TGS1Q96RS0 853 aaKnown RBP16.81■□□□□ 0.28
VPS39-210ENST00000568357 ADAM2Q99965 735 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 C17orf80Q9BSJ5 609 aa16.81■□□□□ 0.28
VPS39-210ENST00000568357 DHX33Q9H6R0 707 aaKnown RBP16.81■□□□□ 0.28
VPS39-210ENST00000568357 RC3H2Q9HBD1 1191 aaKnown RBP16.81■□□□□ 0.28
VPS39-210ENST00000568357 NOL7Q9UMY1 257 aaKnown RBP16.81■□□□□ 0.28
VPS39-210ENST00000568357 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.81■□□□□ 0.28
VPS39-210ENST00000568357 MUC6Q6W4X9 2439 aa16.8■□□□□ 0.28
VPS39-210ENST00000568357 CSDE1O75534 798 aaKnown RBP16.8■□□□□ 0.28
VPS39-210ENST00000568357 DGKIO75912 1065 aa16.8■□□□□ 0.28
VPS39-210ENST00000568357 DARSP14868 501 aaKnown RBP16.8■□□□□ 0.28
VPS39-210ENST00000568357 DSC3Q14574 896 aa16.8■□□□□ 0.28
VPS39-210ENST00000568357 LARP1BQ659C4 914 aaKnown RBP16.8■□□□□ 0.28
VPS39-210ENST00000568357 CATSPER3Q86XQ3 398 aa16.8■□□□□ 0.28
VPS39-210ENST00000568357 RHPN2Q8IUC4 686 aa16.8■□□□□ 0.28
VPS39-210ENST00000568357 NLRP7Q8WX94 980 aa16.8■□□□□ 0.28
VPS39-210ENST00000568357 TMEM143Q96AN5 459 aa16.8■□□□□ 0.28
VPS39-210ENST00000568357 ZNF689Q96CS4 500 aaPredicted RBP16.8■□□□□ 0.28
VPS39-210ENST00000568357 RGS18Q9NS28 235 aa16.8■□□□□ 0.28
VPS39-210ENST00000568357 PPME1Q9Y570 386 aa16.8■□□□□ 0.28
VPS39-210ENST00000568357 MICAL3Q7RTP6 2002 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 COL4A4P53420 1690 aaPredicted RBP16.79■□□□□ 0.28
VPS39-210ENST00000568357 A0A087WZ62 844 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 H3BQV1 296 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 MED24O75448 989 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 POU3F3P20264 500 aaPredicted RBP16.79■□□□□ 0.28
VPS39-210ENST00000568357 FGFR4P22455 802 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 RFC5P40937 340 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 POLGP54098 1239 aaPredicted RBP16.79■□□□□ 0.28
VPS39-210ENST00000568357 CDC42EP1Q00587 391 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 PTGDRQ13258 359 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 GRB10Q13322 594 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 ODR4Q5SWX8 454 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 FAM43BQ6ZT52 329 aaPredicted RBP16.79■□□□□ 0.28
VPS39-210ENST00000568357 NEK9Q8TD19 979 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 PIGOQ8TEQ8 1089 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 PRPF31Q8WWY3 499 aaKnown RBP16.79■□□□□ 0.28
VPS39-210ENST00000568357 SLC7A3Q8WY07 619 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 SCLT1Q96NL6 688 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 JPH2Q9BR39 696 aaPredicted RBP16.79■□□□□ 0.28
VPS39-210ENST00000568357 FDXACB1Q9BRP7 624 aaPredicted RBP16.79■□□□□ 0.28
VPS39-210ENST00000568357 BMP2KQ9NSY1 1161 aaPredicted RBP16.79■□□□□ 0.28
VPS39-210ENST00000568357 MTCH2Q9Y6C9 303 aa16.79■□□□□ 0.28
VPS39-210ENST00000568357 PRRC2BQ5JSZ5 2229 aaKnown RBP16.79■□□□□ 0.28
VPS39-210ENST00000568357 DENND3A2RUS2 1198 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 C9IYK1 514 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 GPR37L1O60883 481 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 LINC00271P0C7V0 271 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 IBSPP21815 317 aaPredicted RBP16.78■□□□□ 0.28
VPS39-210ENST00000568357 SARSP49591 514 aaKnown RBP16.78■□□□□ 0.28
VPS39-210ENST00000568357 GATMP50440 423 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 FAM189BP81408 668 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 IL17AQ16552 155 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 SLC24A5Q71RS6 500 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 NPAS4Q8IUM7 802 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 IFT122Q9HBG6 1241 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 XPNPEP1Q9NQW7 623 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.78■□□□□ 0.28
VPS39-210ENST00000568357 ANKEF1Q9NU02 776 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 EVPLQ92817 2033 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 PIEZO1Q92508 2521 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 WDR81Q562E7 1941 aa16.78■□□□□ 0.28
VPS39-210ENST00000568357 XRCC6P12956 609 aaKnown RBP eCLIP16.77■□□□□ 0.28
VPS39-210ENST00000568357 FXR2P51116 673 aaKnown RBP eCLIP16.77■□□□□ 0.28
VPS39-210ENST00000568357 EMC2Q15006 297 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 EPC2Q52LR7 807 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 ZNF410Q86VK4 478 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 TMEM192Q8IY95 271 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms