RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 DSC3Q14574 896 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 SAFBQ15424 915 aaKnown RBP eCLIP23.24■■□□□ 1.31
CLN3-219ENST00000565778 TIGD5Q53EQ6 642 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 SPOUT1Q5T280 376 aaKnown RBP23.24■■□□□ 1.31
CLN3-219ENST00000565778 FAM102BQ5T8I3 360 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 PLA2G4FQ68DD2 849 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 GCOM2Q9BZD3 368 aaPredicted RBP23.24■■□□□ 1.31
CLN3-219ENST00000565778 CYP26B1Q9NR63 512 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 PCDHA12Q9UN75 941 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 COL4A6Q14031 1691 aa23.24■■□□□ 1.31
CLN3-219ENST00000565778 IGKV6-21A0A0C4DH24 114 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 TBKBP1A7MCY6 615 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 TNFRSF10AO00220 468 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 CSDE1O75534 798 aaKnown RBP23.23■■□□□ 1.31
CLN3-219ENST00000565778 FGFR4P22455 802 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 NPEPPSP55786 919 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 CALCRLQ16602 461 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 TCEAL5Q5H9L2 206 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 OTUD6AQ7L8S5 288 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 DYDC2Q96IM9 177 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 CEP170P1Q96L14 293 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 LLPHQ9BRT6 129 aaKnown RBP23.23■■□□□ 1.31
CLN3-219ENST00000565778 LMAN2LQ9H0V9 348 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 NSUN3Q9H649 340 aaKnown RBP23.23■■□□□ 1.31
CLN3-219ENST00000565778 UBE2ZQ9H832 354 aaPredicted RBP23.23■■□□□ 1.31
CLN3-219ENST00000565778 ALG13Q9NP73 1137 aaKnown RBP23.23■■□□□ 1.31
CLN3-219ENST00000565778 TMEM161AQ9NX61 479 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 RGL1Q9NZL6 768 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 PLAGL2Q9UPG8 496 aa23.23■■□□□ 1.31
CLN3-219ENST00000565778 A0A087WZ62 844 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.22■■□□□ 1.31
CLN3-219ENST00000565778 ATP2B1P20020 1258 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 CTTNQ14247 550 aaKnown RBP23.22■■□□□ 1.31
CLN3-219ENST00000565778 NAALADL2Q58DX5 795 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 EP400NLQ6ZTU2 488 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 RHPN2Q8IUC4 686 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 TPH2Q8IWU9 490 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 C4orf19Q8IY42 314 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 P2RX5Q93086 422 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 C8orf76Q96K31 380 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 KIF2CQ99661 725 aa23.22■■□□□ 1.31
CLN3-219ENST00000565778 FDXACB1Q9BRP7 624 aaPredicted RBP23.22■■□□□ 1.31
CLN3-219ENST00000565778 ELAC1Q9H777 363 aaKnown RBP23.22■■□□□ 1.31
CLN3-219ENST00000565778 WRAP73Q9P2S5 460 aaPredicted RBP23.22■■□□□ 1.31
CLN3-219ENST00000565778 CUL9Q8IWT3 2517 aa23.21■■□□□ 1.31
CLN3-219ENST00000565778 CSPG5O95196 566 aa23.21■■□□□ 1.31
CLN3-219ENST00000565778 FGFR1P11362 822 aa23.21■■□□□ 1.31
CLN3-219ENST00000565778 TXKP42681 527 aa23.21■■□□□ 1.31
CLN3-219ENST00000565778 EXOC8Q8IYI6 725 aa23.21■■□□□ 1.31
CLN3-219ENST00000565778 ZNF579Q8NAF0 562 aaKnown RBP23.21■■□□□ 1.31
CLN3-219ENST00000565778 SLC7A3Q8WY07 619 aa23.21■■□□□ 1.31
CLN3-219ENST00000565778 LXNQ9BS40 222 aa23.21■■□□□ 1.31
CLN3-219ENST00000565778 INO80BQ9C086 356 aaPredicted RBP23.21■■□□□ 1.31
CLN3-219ENST00000565778 ZSWIM4Q9H7M6 989 aa23.21■■□□□ 1.31
CLN3-219ENST00000565778 TTC12Q9H892 705 aaPredicted RBP23.21■■□□□ 1.31
CLN3-219ENST00000565778 WDR81Q562E7 1941 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 NEMFO60524 1076 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 KCNA5P22460 613 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 YWHABP31946 246 aaKnown RBP23.2■■□□□ 1.3
CLN3-219ENST00000565778 POLGP54098 1239 aaPredicted RBP23.2■■□□□ 1.3
CLN3-219ENST00000565778 CYP4A11Q02928 519 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 SPIRE1Q08AE8 756 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 KSR1Q8IVT5 923 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 FAM184AQ8NB25 1140 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 KLHL23Q8NBE8 558 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 NECAB3Q96P71 396 aaPredicted RBP23.2■■□□□ 1.3
CLN3-219ENST00000565778 SH2B1Q9NRF2 756 aaPredicted RBP23.2■■□□□ 1.3
CLN3-219ENST00000565778 AAASQ9NRG9 546 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 TYW1Q9NV66 732 aaKnown RBP23.2■■□□□ 1.3
CLN3-219ENST00000565778 PCDHB12Q9Y5F1 795 aa23.2■■□□□ 1.3
CLN3-219ENST00000565778 ITGB1P05556 798 aa23.19■■□□□ 1.3
CLN3-219ENST00000565778 XKR9Q5GH70 373 aa23.19■■□□□ 1.3
CLN3-219ENST00000565778 ZNF410Q86VK4 478 aa23.19■■□□□ 1.3
CLN3-219ENST00000565778 ECHDC2Q86YB7 292 aa23.19■■□□□ 1.3
CLN3-219ENST00000565778 RNF169Q8NCN4 708 aa23.19■■□□□ 1.3
CLN3-219ENST00000565778 SPPL3Q8TCT6 385 aa23.19■■□□□ 1.3
CLN3-219ENST00000565778 NLRP4Q96MN2 994 aa23.19■■□□□ 1.3
CLN3-219ENST00000565778 EIF2AK1Q9BQI3 630 aaKnown RBP23.19■■□□□ 1.3
CLN3-219ENST00000565778 PPME1Q9Y570 386 aa23.19■■□□□ 1.3
CLN3-219ENST00000565778 XIRP2A4UGR9 3374 aa23.18■■□□□ 1.3
CLN3-219ENST00000565778 WNT7AO00755 349 aa23.18■■□□□ 1.3
CLN3-219ENST00000565778 ZBTB39O15060 712 aa23.18■■□□□ 1.3
CLN3-219ENST00000565778 HOXA2O43364 376 aa23.18■■□□□ 1.3
CLN3-219ENST00000565778 SLITRK3O94933 977 aa23.18■■□□□ 1.3
CLN3-219ENST00000565778 RFC5P40937 340 aa23.18■■□□□ 1.3
CLN3-219ENST00000565778 HMGN5P82970 282 aaKnown RBP23.18■■□□□ 1.3
CLN3-219ENST00000565778 ABI1Q8IZP0 508 aa23.18■■□□□ 1.3
CLN3-219ENST00000565778 TMEM143Q96AN5 459 aa23.18■■□□□ 1.3
CLN3-219ENST00000565778 DACT1Q9NYF0 836 aa23.18■■□□□ 1.3
CLN3-219ENST00000565778 NLRC5Q86WI3 1866 aa23.17■■□□□ 1.3
CLN3-219ENST00000565778 NCK2O43639 380 aa23.17■■□□□ 1.3
CLN3-219ENST00000565778 SFPQP23246 707 aaKnown RBP eCLIP23.17■■□□□ 1.3
CLN3-219ENST00000565778 MCM7P33993 719 aa23.17■■□□□ 1.3
CLN3-219ENST00000565778 RBM25P49756 843 aaKnown RBP23.17■■□□□ 1.3
CLN3-219ENST00000565778 GNL2Q13823 731 aaKnown RBP23.17■■□□□ 1.3
CLN3-219ENST00000565778 POF1BQ8WVV4 589 aa23.17■■□□□ 1.3
CLN3-219ENST00000565778 PRPF31Q8WWY3 499 aaKnown RBP23.17■■□□□ 1.3
CLN3-219ENST00000565778 MTMR9Q96QG7 549 aa23.17■■□□□ 1.3
CLN3-219ENST00000565778 TMEM117Q9H0C3 514 aa23.17■■□□□ 1.3
CLN3-219ENST00000565778 DHX33Q9H6R0 707 aaKnown RBP23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms