RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 FAM86C2PA6NEL3 165 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 LINC01565O15544 149 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 TDP2O95551 362 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 FGFR1P11362 822 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 LAG3P18627 525 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 PLA2G5P39877 138 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 GPC3P51654 580 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 STK3Q13188 491 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 TARBP2Q15633 366 aaKnown RBP21.08■□□□□ 0.97
CLN3-218ENST00000565688 XKR3Q5GH77 459 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 PDE12Q6L8Q7 609 aaKnown RBP21.08■□□□□ 0.97
CLN3-218ENST00000565688 KRT25Q7Z3Z0 450 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 THNSL1Q8IYQ7 743 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 COLGALT1Q8NBJ5 622 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 MICAL1Q8TDZ2 1067 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 MBOAT7Q96N66 472 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 LARP6Q9BRS8 491 aaKnown RBP21.08■□□□□ 0.97
CLN3-218ENST00000565688 TLR9Q9NR96 1032 aa21.08■□□□□ 0.97
CLN3-218ENST00000565688 C5orf42Q9H799 3197 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 PRR33A8MZF0 331 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 DCXO43602 365 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 FGF18O76093 207 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 EYA4O95677 639 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 DARSP14868 501 aaKnown RBP21.07■□□□□ 0.96
CLN3-218ENST00000565688 NRIP1P48552 1158 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 DNM2P50570 870 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 NPY5RQ15761 445 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 B3GNT9Q6UX72 402 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 ADGRD2Q7Z7M1 963 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 ABI1Q8IZP0 508 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 ETNPPLQ8TBG4 499 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 NLRP7Q8WX94 980 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 GJA10Q969M2 543 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 FAM122AQ96E09 287 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 MSLNLQ96KJ4 702 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 TLE6Q9H808 572 aa21.07■□□□□ 0.96
CLN3-218ENST00000565688 SEPT9Q9UHD8 586 aaPredicted RBP21.07■□□□□ 0.96
CLN3-218ENST00000565688 DDX25Q9UHL0 483 aaKnown RBP21.07■□□□□ 0.96
CLN3-218ENST00000565688 NEFLP07196 543 aa21.06■□□□□ 0.96
CLN3-218ENST00000565688 XBP1P17861 261 aa21.06■□□□□ 0.96
CLN3-218ENST00000565688 CDCA3Q99618 268 aaPredicted RBP21.06■□□□□ 0.96
CLN3-218ENST00000565688 CWH43Q9H720 699 aa21.06■□□□□ 0.96
CLN3-218ENST00000565688 DACT1Q9NYF0 836 aa21.06■□□□□ 0.96
CLN3-218ENST00000565688 LZTS1Q9Y250 596 aa21.06■□□□□ 0.96
CLN3-218ENST00000565688 COASYQ13057 564 aa21.05■□□□□ 0.96
CLN3-218ENST00000565688 MTERF2Q49AM1 385 aa21.05■□□□□ 0.96
CLN3-218ENST00000565688 RBM23Q86U06 439 aaKnown RBP21.05■□□□□ 0.96
CLN3-218ENST00000565688 ECHDC2Q86YB7 292 aa21.05■□□□□ 0.96
CLN3-218ENST00000565688 LRRC43Q8N309 656 aa21.05■□□□□ 0.96
CLN3-218ENST00000565688 AIFM3Q96NN9 605 aa21.05■□□□□ 0.96
CLN3-218ENST00000565688 CASD1Q96PB1 797 aa21.05■□□□□ 0.96
CLN3-218ENST00000565688 GCOM2Q9BZD3 368 aaPredicted RBP21.05■□□□□ 0.96
CLN3-218ENST00000565688 CLEC1BQ9P126 229 aa21.05■□□□□ 0.96
CLN3-218ENST00000565688 PUF60Q9UHX1 559 aaKnown RBP21.05■□□□□ 0.96
CLN3-218ENST00000565688 PLXNA4Q9HCM2 1894 aa21.05■□□□□ 0.96
CLN3-218ENST00000565688 STK36Q9NRP7 1315 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 IGKV6-21A0A0C4DH24 114 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 A0A0U1RQF3 1178 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 CCDC194A0A1B0GVG4 234 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 EOMESO95936 686 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 GCFC2P16383 781 aaKnown RBP21.04■□□□□ 0.96
CLN3-218ENST00000565688 PPM1AP35813 382 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 PSMC5P62195 406 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 PLCB3Q01970 1234 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 INF2Q27J81 1249 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 SMRP1Q8NCR6 262 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 ZNF668Q96K58 619 aaPredicted RBP21.04■□□□□ 0.96
CLN3-218ENST00000565688 FAM20AQ96MK3 541 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 JPH2Q9BR39 696 aaPredicted RBP21.04■□□□□ 0.96
CLN3-218ENST00000565688 PHF20Q9BVI0 1012 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 SLKQ9H2G2 1235 aaPredicted RBP21.04■□□□□ 0.96
CLN3-218ENST00000565688 CHST12Q9NRB3 414 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 HCSTQ9UBK5 93 aa21.04■□□□□ 0.96
CLN3-218ENST00000565688 DDX11L8A8MPP1 907 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 DKC1O60832 514 aaKnown RBP eCLIP21.03■□□□□ 0.96
CLN3-218ENST00000565688 STBD1O95210 358 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 SCRN1Q12765 414 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 LETM2Q2VYF4 491 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 PPP4R3AQ6IN85 833 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 RSPH1Q8WYR4 309 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 MRPS27Q92552 414 aaKnown RBP21.03■□□□□ 0.96
CLN3-218ENST00000565688 ZNF558Q96NG5 402 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 CEP89Q96ST8 783 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 NAP1L4Q99733 375 aaKnown RBP21.03■□□□□ 0.96
CLN3-218ENST00000565688 INO80BQ9C086 356 aaPredicted RBP21.03■□□□□ 0.96
CLN3-218ENST00000565688 RNF19AQ9NV58 838 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 KCNJ14Q9UNX9 436 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 PCDHGC5Q9Y5F6 944 aa21.03■□□□□ 0.96
CLN3-218ENST00000565688 FSCN2O14926 492 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 PFKFB2O60825 505 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 MAFO75444 373 aaPredicted RBP21.02■□□□□ 0.96
CLN3-218ENST00000565688 GLP2RO95838 553 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 SRGAP2BP0DMP2 458 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 SFPQP23246 707 aaKnown RBP eCLIP21.02■□□□□ 0.96
CLN3-218ENST00000565688 ERVFC1P60507 584 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 KRT17Q04695 432 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 PPP2R5CQ13362 524 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 DRP2Q13474 957 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 DUSP6Q16828 381 aa21.02■□□□□ 0.96
CLN3-218ENST00000565688 KCNT2Q6UVM3 1135 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms