RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PRPF31Q8WWY3 499 aaKnown RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 HEXIM2Q96MH2 286 aaKnown RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 CCSER1Q9C0I3 900 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 TUFT1Q9NNX1 390 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 AFG3L2Q9Y4W6 797 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 GOLGA6L9A6NEM1 432 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 THAP12O43422 761 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 CIITAP33076 1130 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 KNOP1Q1ED39 458 aaKnown RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 XRRA1Q6P2D8 792 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 LBX2Q6XYB7 198 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 LENG1Q96BZ8 264 aaPredicted RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 C2orf40Q9H1Z8 148 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 RNF19AQ9NV58 838 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 RBAKQ9NYW8 714 aaPredicted RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 TRPM3Q9HCF6 1732 aaPredicted RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 GFPT2O94808 682 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 GHRP10912 638 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 PRPHP41219 470 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 YWHAEP62258 255 aaKnown RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 PSMC6P62333 389 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 DNERQ8NFT8 737 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 DNAJB3Q8WWF6 145 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 FERMT1Q9BQL6 677 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 CCDC113Q9H0I3 377 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 MTIF3Q9H2K0 278 aaKnown RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 C2CD2LO14523 706 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 FOXP2O15409 715 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 ATP9AO75110 1047 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 ERCC5P28715 1186 aaPredicted RBP10.03□□□□□ -0.8
VPS39-205ENST00000562258 GRK4P32298 578 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 ZNF445P59923 1031 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 PSMD2Q13200 908 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 PCNX4Q63HM2 1172 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.03□□□□□ -0.8
VPS39-205ENST00000562258 NUP58Q9BVL2 599 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 MAK16Q9BXY0 300 aaKnown RBP10.03□□□□□ -0.8
VPS39-205ENST00000562258 SUPT20HL2P0C7V6 817 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 ZBTB48P10074 688 aaPredicted RBP10.03□□□□□ -0.8
VPS39-205ENST00000562258 CCL23P55773 120 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 PPP2R3AQ06190 1150 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 FAM110CQ1W6H9 321 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 IQCEQ6IPM2 695 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 ZNF746Q6NUN9 644 aaPredicted RBP10.03□□□□□ -0.8
VPS39-205ENST00000562258 ANKS1AQ92625 1134 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 AGXT2Q9BYV1 514 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 RANBP17Q9H2T7 1088 aaKnown RBP10.03□□□□□ -0.8
VPS39-205ENST00000562258 CYP26B1Q9NR63 512 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 TMEM39AQ9NV64 488 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 N4BP1O75113 896 aaKnown RBP10.03□□□□□ -0.8
VPS39-205ENST00000562258 CASP14P31944 242 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 SSTR3P32745 418 aaPredicted RBP10.03□□□□□ -0.8
VPS39-205ENST00000562258 MXD4Q14582 209 aaPredicted RBP10.03□□□□□ -0.8
VPS39-205ENST00000562258 MAN2A1Q16706 1144 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 VSIG10LQ86VR7 867 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 SHCBP1Q8NEM2 672 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 NHSL1Q5SYE7 1610 aa10.03□□□□□ -0.8
VPS39-205ENST00000562258 A0A087WZ62 844 aa10.02□□□□□ -0.8
VPS39-205ENST00000562258 STK25O00506 426 aa10.02□□□□□ -0.8
VPS39-205ENST00000562258 MYL1P05976 194 aa10.02□□□□□ -0.8
VPS39-205ENST00000562258 PDE6CP51160 858 aa10.02□□□□□ -0.8
VPS39-205ENST00000562258 OAZ1P54368 228 aa10.02□□□□□ -0.8
VPS39-205ENST00000562258 WDR72Q3MJ13 1102 aa10.02□□□□□ -0.8
VPS39-205ENST00000562258 ACAP3Q96P50 834 aa10.02□□□□□ -0.8
VPS39-205ENST00000562258 FDXACB1Q9BRP7 624 aaPredicted RBP10.02□□□□□ -0.8
VPS39-205ENST00000562258 NDST4Q9H3R1 872 aa10.02□□□□□ -0.8
VPS39-205ENST00000562258 LRRC4Q9HBW1 653 aa10.02□□□□□ -0.8
VPS39-205ENST00000562258 PVALEFA0A1B0GWK0 134 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 MEIS2O14770 477 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 HUS1O60921 280 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 LDHAP00338 332 aaKnown RBP10.02□□□□□ -0.81
VPS39-205ENST00000562258 ST3GAL1Q11201 340 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 NKX2-3Q8TAU0 364 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 LMBR1Q8WVP7 490 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 PLEKHA4Q9H4M7 779 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.02□□□□□ -0.81
VPS39-205ENST00000562258 COMMD10Q9Y6G5 202 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 V9GYY5 206 aaPredicted RBP10.02□□□□□ -0.81
VPS39-205ENST00000562258 MYO7AQ13402 2215 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 GOLGA4Q13439 2230 aaKnown RBP10.02□□□□□ -0.81
VPS39-205ENST00000562258 UBA1P22314 1058 aaKnown RBP10.02□□□□□ -0.81
VPS39-205ENST00000562258 OR1G1P47890 313 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 APLP1P51693 650 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 EFNA5P52803 228 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 SEPT7Q16181 437 aaKnown RBP10.02□□□□□ -0.81
VPS39-205ENST00000562258 METTL16Q86W50 562 aaKnown RBP10.02□□□□□ -0.81
VPS39-205ENST00000562258 FAM133AQ8N9E0 248 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 URGCPQ8TCY9 931 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 RUSC1Q9BVN2 902 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 AGO4Q9HCK5 861 aaKnown RBP10.02□□□□□ -0.81
VPS39-205ENST00000562258 TACC3Q9Y6A5 838 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 KNL1Q8NG31 2342 aa10.02□□□□□ -0.81
VPS39-205ENST00000562258 EML1O00423 815 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 PPFIA4O75335 1185 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 TGFB3P10600 412 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 MFAP3P55082 362 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 PRKCZQ05513 592 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 PAK2Q13177 524 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 ORC2Q13416 577 aaPredicted RBP10.01□□□□□ -0.81
VPS39-205ENST00000562258 GLB1LQ6UWU2 654 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms