RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 BMP2KQ9NSY1 1161 aaPredicted RBP17.54■□□□□ 0.4
VPS39-203ENST00000561797 SUCLA2Q9P2R7 463 aaPredicted RBP17.54■□□□□ 0.4
VPS39-203ENST00000561797 THEGQ9P2T0 379 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 PCDHB7Q9Y5E2 793 aa17.54■□□□□ 0.4
VPS39-203ENST00000561797 ZBTB39O15060 712 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 CSDE1O75534 798 aaKnown RBP17.53■□□□□ 0.4
VPS39-203ENST00000561797 CD2BP2O95400 341 aaKnown RBP17.53■□□□□ 0.4
VPS39-203ENST00000561797 YWHABP31946 246 aaKnown RBP17.53■□□□□ 0.4
VPS39-203ENST00000561797 SLC24A5Q71RS6 500 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 RHPN2Q8IUC4 686 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 ZNF710Q8N1W2 664 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 TMX3Q96JJ7 454 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 TBC1D32Q96NH3 1257 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 MTMR9Q96QG7 549 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 EIF2AK1Q9BQI3 630 aaKnown RBP17.53■□□□□ 0.4
VPS39-203ENST00000561797 ZSWIM4Q9H7M6 989 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 C1orf112Q9NSG2 853 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 LMCD1Q9NZU5 365 aa17.53■□□□□ 0.4
VPS39-203ENST00000561797 A0A087WZ62 844 aa17.52■□□□□ 0.4
VPS39-203ENST00000561797 C9IYK1 514 aa17.52■□□□□ 0.4
VPS39-203ENST00000561797 H3BNC9 293 aa17.52■□□□□ 0.4
VPS39-203ENST00000561797 SLITRK3O94933 977 aa17.52■□□□□ 0.4
VPS39-203ENST00000561797 DARSP14868 501 aaKnown RBP17.52■□□□□ 0.4
VPS39-203ENST00000561797 POLGP54098 1239 aaPredicted RBP17.52■□□□□ 0.4
VPS39-203ENST00000561797 DSC3Q14574 896 aa17.52■□□□□ 0.4
VPS39-203ENST00000561797 XKR9Q5GH70 373 aa17.52■□□□□ 0.4
VPS39-203ENST00000561797 OTUD6AQ7L8S5 288 aa17.52■□□□□ 0.4
VPS39-203ENST00000561797 KSR1Q8IVT5 923 aa17.52■□□□□ 0.4
VPS39-203ENST00000561797 CMTR2Q8IYT2 770 aaKnown RBP17.52■□□□□ 0.4
VPS39-203ENST00000561797 SLC7A3Q8WY07 619 aa17.52■□□□□ 0.4
VPS39-203ENST00000561797 JPH2Q9BR39 696 aaPredicted RBP17.52■□□□□ 0.4
VPS39-203ENST00000561797 FDXACB1Q9BRP7 624 aaPredicted RBP17.52■□□□□ 0.4
VPS39-203ENST00000561797 COL25A1Q9BXS0 654 aaPredicted RBP17.52■□□□□ 0.4
VPS39-203ENST00000561797 GCOM2Q9BZD3 368 aaPredicted RBP17.52■□□□□ 0.4
VPS39-203ENST00000561797 POTEMA6NI47 508 aa17.51■□□□□ 0.39
VPS39-203ENST00000561797 LINC00271P0C7V0 271 aa17.51■□□□□ 0.39
VPS39-203ENST00000561797 ZSCAN20P17040 1043 aaPredicted RBP17.51■□□□□ 0.39
VPS39-203ENST00000561797 BMPR1AP36894 532 aa17.51■□□□□ 0.39
VPS39-203ENST00000561797 TTC38Q5R3I4 469 aa17.51■□□□□ 0.39
VPS39-203ENST00000561797 FAM43BQ6ZT52 329 aaPredicted RBP17.51■□□□□ 0.39
VPS39-203ENST00000561797 NOSTRINQ8IVI9 506 aa17.51■□□□□ 0.39
VPS39-203ENST00000561797 TMEM143Q96AN5 459 aa17.51■□□□□ 0.39
VPS39-203ENST00000561797 NLRP4Q96MN2 994 aa17.51■□□□□ 0.39
VPS39-203ENST00000561797 MRPL42Q9Y6G3 142 aaKnown RBP17.51■□□□□ 0.39
VPS39-203ENST00000561797 A0A087WWV3 80 aa17.5■□□□□ 0.39
VPS39-203ENST00000561797 RFC5P40937 340 aa17.5■□□□□ 0.39
VPS39-203ENST00000561797 TECP42680 631 aa17.5■□□□□ 0.39
VPS39-203ENST00000561797 CDC42EP1Q00587 391 aa17.5■□□□□ 0.39
VPS39-203ENST00000561797 FAM102BQ5T8I3 360 aa17.5■□□□□ 0.39
VPS39-203ENST00000561797 EXOC8Q8IYI6 725 aa17.5■□□□□ 0.39
VPS39-203ENST00000561797 ATXN2LQ8WWM7 1075 aaKnown RBP17.5■□□□□ 0.39
VPS39-203ENST00000561797 CLP1Q92989 425 aaKnown RBP17.5■□□□□ 0.39
VPS39-203ENST00000561797 MRPL38Q96DV4 380 aaKnown RBP17.5■□□□□ 0.39
VPS39-203ENST00000561797 HSD17B14Q9BPX1 270 aa17.5■□□□□ 0.39
VPS39-203ENST00000561797 DHX33Q9H6R0 707 aaKnown RBP17.5■□□□□ 0.39
VPS39-203ENST00000561797 ATP6V0A4Q9HBG4 840 aa17.5■□□□□ 0.39
VPS39-203ENST00000561797 RNF216Q9NWF9 866 aaPredicted RBP17.5■□□□□ 0.39
VPS39-203ENST00000561797 NOL7Q9UMY1 257 aaKnown RBP17.5■□□□□ 0.39
VPS39-203ENST00000561797 RWDD3Q9Y3V2 267 aa17.5■□□□□ 0.39
VPS39-203ENST00000561797 PRUNE2Q8WUY3 3088 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 TBKBP1A7MCY6 615 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 RB1P06400 928 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 OR52Z1P0C646 297 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 FAM189BP81408 668 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 MRPS5P82675 430 aaKnown RBP17.49■□□□□ 0.39
VPS39-203ENST00000561797 TFF2Q03403 129 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 NBR1Q14596 966 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 EMC2Q15006 297 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 PTPROQ16827 1216 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 TJAP1Q5JTD0 557 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 SPOUT1Q5T280 376 aaKnown RBP17.49■□□□□ 0.39
VPS39-203ENST00000561797 ZNF410Q86VK4 478 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 IL27Q8NEV9 243 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 NEK9Q8TD19 979 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 C11orf84Q9BUA3 381 aaPredicted RBP17.49■□□□□ 0.39
VPS39-203ENST00000561797 TMEM161AQ9NX61 479 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 KIF3AQ9Y496 699 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 PPME1Q9Y570 386 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 COL4A3BPQ9Y5P4 624 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 MYO7AQ13402 2215 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 REV3LO60673 3130 aa17.49■□□□□ 0.39
VPS39-203ENST00000561797 C5orf67F2Z3F1 127 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 GRM6O15303 877 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 CSPG5O95196 566 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 SRGAP2CP0DJJ0 459 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 FGFR1P11362 822 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 U2AF2P26368 475 aaKnown RBP eCLIP17.48■□□□□ 0.39
VPS39-203ENST00000561797 GJB2P29033 226 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 MCM2P49736 904 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 MCTP1Q6DN14 999 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 RNF169Q8NCN4 708 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 PIGOQ8TEQ8 1089 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 TCP11Q8WWU5 503 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 PRPF31Q8WWY3 499 aaKnown RBP17.48■□□□□ 0.39
VPS39-203ENST00000561797 PSPC1Q8WXF1 523 aaKnown RBP17.48■□□□□ 0.39
VPS39-203ENST00000561797 CCDC43Q96MW1 224 aaKnown RBP17.48■□□□□ 0.39
VPS39-203ENST00000561797 ASB2Q96Q27 587 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 MTRQ99707 1265 aa17.48■□□□□ 0.39
VPS39-203ENST00000561797 INO80BQ9C086 356 aaPredicted RBP17.48■□□□□ 0.39
VPS39-203ENST00000561797 LYPLA2O95372 231 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms