RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TPTE2Q6XPS3 522 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 SPIRE2Q8WWL2 714 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 LRRC45Q96CN5 670 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 PSMD1Q99460 953 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 ABCF3Q9NUQ8 709 aa13.4□□□□□ -0.26
LDLR-205ENST00000557933 UTP11Q9Y3A2 253 aaKnown RBP13.4□□□□□ -0.26
LDLR-205ENST00000557933 KLRG2A4D1S0 409 aaPredicted RBP13.4□□□□□ -0.27
LDLR-205ENST00000557933 ANKRD63C9JTQ0 380 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 SMTNP53814 917 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 C16orf86Q6ZW13 317 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 NT5DC3Q86UY8 548 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 MREGQ8N565 214 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 ANKRD42Q8N9B4 389 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 STAMBPL1Q96FJ0 436 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 MTMR4Q9NYA4 1195 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 CTNNAL1Q9UBT7 734 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 STK38LQ9Y2H1 464 aa13.4□□□□□ -0.27
LDLR-205ENST00000557933 DLEC1Q9Y238 1755 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 GSCP56915 257 aaPredicted RBP13.39□□□□□ -0.27
LDLR-205ENST00000557933 GPSM2P81274 684 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 MYO1EQ12965 1108 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 NAA25Q14CX7 972 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 MSL1Q68DK7 614 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 SPICE1Q8N0Z3 855 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 GDAP1Q8TB36 358 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 SLC20A1Q8WUM9 679 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 RNF25Q96BH1 459 aaPredicted RBP13.39□□□□□ -0.27
LDLR-205ENST00000557933 AIPL1Q9NZN9 384 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 MYH7BA7E2Y1 1941 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 LTBP1Q14766 1721 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 ACSL3O95573 720 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 DAB2IPQ5VWQ8 1189 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 NSMFQ6X4W1 530 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 WDR66Q8TBY9 1149 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 ATP8B4Q8TF62 1192 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 DHX36Q9H2U1 1008 aaKnown RBP13.39□□□□□ -0.27
LDLR-205ENST00000557933 TBK1Q9UHD2 729 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 PCDHA1Q9Y5I3 950 aa13.39□□□□□ -0.27
LDLR-205ENST00000557933 KIF13BQ9NQT8 1826 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 FLOT1O75955 427 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 PPP1R2P41236 205 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 DR1Q01658 176 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 SNX1Q13596 522 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 C2CD6Q53TS8 623 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 FAM182AQ5T1J6 154 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 CD302Q8IX05 232 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 ZFPM1Q8IX07 1006 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 ARFGAP2Q8N6H7 521 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 CUL5Q93034 780 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 TATDN2Q93075 761 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 ANKRD2Q9GZV1 360 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 PCIF1Q9H4Z3 704 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 RIOX1Q9H6W3 641 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 COG5Q9UP83 839 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 AGAP1Q9UPQ3 857 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 NR3C1P04150 777 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 DRD4P21917 467 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 KCNJ2P63252 427 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 LONRF1Q17RB8 773 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 CBWD6Q4V339 395 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 CBWD3Q5JTY5 395 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 CBWD5Q5RIA9 395 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 PPP4R3AQ6IN85 833 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 SLC35C1Q96A29 364 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 XPO6Q96QU8 1125 aaKnown RBP13.38□□□□□ -0.27
LDLR-205ENST00000557933 CD209Q9NNX6 404 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 USP40Q9NVE5 1235 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 RNF14Q9UBS8 474 aa13.38□□□□□ -0.27
LDLR-205ENST00000557933 MYCNP04198 464 aaPredicted RBP13.37□□□□□ -0.27
LDLR-205ENST00000557933 ELF1P32519 619 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 CLNS1AP54105 237 aaKnown RBP13.37□□□□□ -0.27
LDLR-205ENST00000557933 RHBDL3P58872 404 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 GIT2Q14161 759 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 DRAP1Q14919 205 aaPredicted RBP13.37□□□□□ -0.27
LDLR-205ENST00000557933 RUFY4Q6ZNE9 571 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 ZDHHC14Q8IZN3 488 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 MRRFQ96E11 262 aaKnown RBP13.37□□□□□ -0.27
LDLR-205ENST00000557933 DDX23Q9BUQ8 820 aaKnown RBP13.37□□□□□ -0.27
LDLR-205ENST00000557933 AMFRQ9UKV5 643 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 KIAA1551Q9HCM1 1747 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 NFIAQ12857 509 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 CUL1Q13616 776 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 MESDQ14696 234 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 KNOP1Q1ED39 458 aaKnown RBP13.37□□□□□ -0.27
LDLR-205ENST00000557933 QRICH1Q2TAL8 776 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 CRY2Q49AN0 593 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 NLGN1Q8N2Q7 840 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 BANK1Q8NDB2 785 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 ZSWIM2Q8NEG5 633 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 KAT5Q92993 513 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 CHMP6Q96FZ7 201 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 SGSM3Q96HU1 749 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 SIX2Q9NPC8 291 aa13.37□□□□□ -0.27
LDLR-205ENST00000557933 GBP2P32456 591 aaPredicted RBP13.36□□□□□ -0.27
LDLR-205ENST00000557933 PDIA5Q14554 519 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 DPY19L2P1Q6NXN4 242 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 PRUNE1Q86TP1 453 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 TPH2Q8IWU9 490 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 ACTRT1Q8TDG2 376 aa13.36□□□□□ -0.27
LDLR-205ENST00000557933 KCNV2Q8TDN2 545 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms