RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 FAM167AQ96KS9 214 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 SLKQ9H2G2 1235 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-227ENST00000557307 KCNMB3Q9NPA1 279 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 BMP2KQ9NSY1 1161 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-227ENST00000557307 DDX25Q9UHL0 483 aaKnown RBP12.3□□□□□ -0.44
SYNE2-227ENST00000557307 LRFN2Q9ULH4 789 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 STAG3L1P0CL83 205 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 JAK3P52333 1124 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 NPEPPSP55786 919 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 FAM189BP81408 668 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 CLLU1OSQ5K130 101 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 PIK3AP1Q6ZUJ8 805 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 ANO5Q75V66 913 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 COLGALT1Q8NBJ5 622 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 VN1R2Q8NFZ6 395 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 P2RX5Q93086 422 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 LMAN2LQ9H0V9 348 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 TYW1Q9NV66 732 aaKnown RBP12.29□□□□□ -0.44
SYNE2-227ENST00000557307 CEP131Q9UPN4 1083 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 RWDD3Q9Y3V2 267 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 PCDHB7Q9Y5E2 793 aa12.29□□□□□ -0.44
SYNE2-227ENST00000557307 A0A087WZ62 844 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 IGKV6-21A0A0C4DH24 114 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 MEIS3P2A8K0S8 358 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 ZBTB39O15060 712 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 GPR182O15218 404 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 DARSP14868 501 aaKnown RBP12.28□□□□□ -0.44
SYNE2-227ENST00000557307 EIF4BP23588 611 aaKnown RBP12.28□□□□□ -0.44
SYNE2-227ENST00000557307 SFNP31947 248 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 ERVFC1P60507 584 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 SPIRE1Q08AE8 756 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 TBC1D8BQ0IIM8 1120 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 MOXD1Q6UVY6 613 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 SLC24A5Q71RS6 500 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 KRT25Q7Z3Z0 450 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 RBM23Q86U06 439 aaKnown RBP12.28□□□□□ -0.44
SYNE2-227ENST00000557307 NSUN7Q8NE18 718 aaKnown RBP12.28□□□□□ -0.44
SYNE2-227ENST00000557307 GTF3C6Q969F1 213 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 CASD1Q96PB1 797 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 MAP7D2Q96T17 732 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 FDXACB1Q9BRP7 624 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-227ENST00000557307 PLVAPQ9BX97 442 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 NIFKQ9BYG3 293 aaKnown RBP12.28□□□□□ -0.44
SYNE2-227ENST00000557307 C1orf112Q9NSG2 853 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 TMEM161AQ9NX61 479 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 CLEC1BQ9P126 229 aa12.28□□□□□ -0.44
SYNE2-227ENST00000557307 ORC3Q9UBD5 711 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-227ENST00000557307 TDRD15B5MCY1 1934 aaKnown RBP12.27□□□□□ -0.44
SYNE2-227ENST00000557307 WDFY4Q6ZS81 3184 aa12.27□□□□□ -0.44
SYNE2-227ENST00000557307 CCDC194A0A1B0GVG4 234 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 PER2O15055 1255 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 MAGEB2O15479 319 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 MBTPS2O43462 519 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 CCNT1O60563 726 aaKnown RBP12.27□□□□□ -0.45
SYNE2-227ENST00000557307 NRIP1P48552 1158 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 ZP2Q05996 745 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 LONRF3Q496Y0 759 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 XKR3Q5GH77 459 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 NEK8Q86SG6 692 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 ZNF598Q86UK7 904 aaKnown RBP12.27□□□□□ -0.45
SYNE2-227ENST00000557307 ECHDC2Q86YB7 292 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 RNF169Q8NCN4 708 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 NLRP7Q8WX94 980 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 LPPQ93052 612 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 LRFN3Q9BTN0 628 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 ATP6V0A4Q9HBG4 840 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 NRBP2Q9NSY0 501 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 RGL1Q9NZL6 768 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 BARX2Q9UMQ3 279 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-227ENST00000557307 PLXNA3P51805 1871 aa12.27□□□□□ -0.45
SYNE2-227ENST00000557307 DDX11L8A8MPP1 907 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 B4GALT3O60512 393 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 MAFO75444 373 aaPredicted RBP12.26□□□□□ -0.45
SYNE2-227ENST00000557307 FGF18O76093 207 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 ANAPC15P60006 121 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 PPP2R5CQ13362 524 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 ADAM15Q13444 863 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 SPOUT1Q5T280 376 aaKnown RBP12.26□□□□□ -0.45
SYNE2-227ENST00000557307 GALNT17Q6IS24 598 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 CPLX2Q6PUV4 134 aaKnown RBP12.26□□□□□ -0.45
SYNE2-227ENST00000557307 GJD3Q8N144 294 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 RDM1Q8NG50 284 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 HELQQ8TDG4 1101 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 DYDC2Q96IM9 177 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 MSLNLQ96KJ4 702 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 C22orf23Q9BZE7 217 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 MINDY3Q9H8M7 445 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 CDH22Q9UJ99 828 aa12.26□□□□□ -0.45
SYNE2-227ENST00000557307 DENND4AQ7Z401 1863 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 C2orf16Q68DN1 1984 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 A0A087WWV3 80 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 NT5C1B-RDH14C9J2C7 533 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 FSCN2O14926 492 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 CDKL5O76039 1030 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 SSTR3P32745 418 aaPredicted RBP12.25□□□□□ -0.45
SYNE2-227ENST00000557307 PSMC5P62195 406 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 CYP4A11Q02928 519 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 CTTNQ14247 550 aaKnown RBP12.25□□□□□ -0.45
SYNE2-227ENST00000557307 PLPP4Q5VZY2 271 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 NCAPH2Q6IBW4 605 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms