RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 PCDH18Q9HCL0 1135 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 SLC52A1Q9NWF4 448 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 HYPKQ9NX55 129 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.32□□□□□ -1.88
SLIRP-208ENST00000556956 LRP2BPQ9P2M1 347 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 CGGBP1Q9UFW8 167 aaPredicted RBP3.32□□□□□ -1.88
SLIRP-208ENST00000556956 ST6GALNAC2Q9UJ37 374 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 CFAP45Q9UL16 551 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 PCDHB10Q9UN67 800 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 HDAC5Q9UQL6 1122 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 FAN1Q9Y2M0 1017 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 AATKQ6ZMQ8 1374 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 ATP10DQ9P241 1426 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 ADGRB1O14514 1584 aa3.32□□□□□ -1.88
SLIRP-208ENST00000556956 MROH2AA6NES4 1674 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CAMSAP1Q5T5Y3 1602 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CDC42BPGQ6DT37 1551 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 DIP2CQ9Y2E4 1556 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ADGRB3O60242 1522 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 TULP4Q9NRJ4 1543 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 RIMS2Q9UQ26 1411 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ARHGEF10O15013 1369 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 MSH6P52701 1360 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 TTC41PQ6P2S7 1318 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 NPHP3Q7Z494 1330 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 TTC21BQ7Z4L5 1316 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 TTC21AQ8NDW8 1320 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 IRS2Q9Y4H2 1338 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ERICH4A6NGS2 130 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CCDC69A6NI79 296 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 AGRPO00253 132 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 BUB1BO60566 1050 aaPredicted RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 GLRX3O76003 335 aaKnown RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 NCAM1P13591 858 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 IFNGR1P15260 489 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 TCF3P15923 654 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 H2AFXP16104 143 aaPredicted RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CASTP20810 708 aaKnown RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 KCNJ6P48051 423 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 HNRNPH2P55795 449 aaKnown RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 KRTAP10-11P60412 298 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 IRX3P78415 501 aaPredicted RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CAP1Q01518 475 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ARID5AQ03989 594 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 LRMPQ12912 555 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ELF2Q15723 593 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CAMK4Q16566 473 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 DPY19L1Q2PZI1 675 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 MUM1L1Q5H9M0 696 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ATL3Q6DD88 541 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 GGT6Q6P531 493 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 FBXO38Q6PIJ6 1188 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 RPTNQ6XPR3 784 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CKAP2LQ8IYA6 745 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CCAR2Q8N163 923 aaKnown RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CCDC150Q8NCX0 1101 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 MNS1Q8NEH6 495 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 BICD2Q8TD16 824 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 UBXN4Q92575 508 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 PPP1R14AQ96A00 147 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 JAKMIP1Q96N16 626 aaKnown RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 KRTAP4-4Q9BYR3 166 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 RNF38Q9H0F5 515 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ZSCAN16Q9H4T2 348 aaPredicted RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 CYP26B1Q9NR63 512 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ANO10Q9NW15 660 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 BABAM1Q9NWV8 329 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 DACT1Q9NYF0 836 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 PSD3Q9NYI0 1048 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ACTR10Q9NZ32 417 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 NRBP1Q9UHY1 535 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 TSPYL4Q9UJ04 414 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 ZNF215Q9UL58 517 aaPredicted RBP3.31□□□□□ -1.88
SLIRP-208ENST00000556956 EXOC6BQ9Y2D4 811 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 TSC22D4Q9Y3Q8 395 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 PCDHA5Q9Y5H7 936 aa3.31□□□□□ -1.88
SLIRP-208ENST00000556956 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.31□□□□□ -1.886e-18■□□□□ 8
SLIRP-208ENST00000556956 MYO5BQ9ULV0 1848 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 EFCAB6Q5THR3 1501 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 YTHDC2Q9H6S0 1430 aaKnown RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 USP42Q9H9J4 1324 aaKnown RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 FAM83GA6ND36 823 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 UNCXA6NJT0 531 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 VGLL3A8MV65 326 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 H3BQV1 296 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 STXBP3O00186 592 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 SURF6O75683 361 aaKnown RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 DDAH1O94760 285 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 KCNH1O95259 989 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 CPP00450 1065 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 IVLP07476 585 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 DBHP09172 617 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 UBTFL1P0CB47 393 aaPredicted RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 HOXC12P31275 282 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 GTF2A2P52657 109 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 TUBB4BP68371 445 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 DCTN1Q14203 1278 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 KRT32Q14532 448 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms