RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 CCDC155Q8N6L0 562 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 ANKLE1Q8NAG6 615 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 MLKLQ8NB16 471 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 KLHDC9Q8NEP7 349 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 DEPTORQ8TB45 409 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 POLR3FQ9H1D9 316 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-220ENST00000555634 C2orf40Q9H1Z8 148 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 RNPEPQ9H4A4 650 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 DHX33Q9H6R0 707 aaKnown RBP12.38□□□□□ -0.43
SHMT2-220ENST00000555634 SUGCTQ9HAC7 445 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 OLFML3Q9NRN5 406 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 AKT3Q9Y243 479 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 TELO2Q9Y4R8 837 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 TANC1Q9C0D5 1861 aa12.38□□□□□ -0.43
SHMT2-220ENST00000555634 CCDC169A6NNP5 214 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 ASAP2O43150 1006 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 GCNT3O95395 438 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 C22orf31O95567 290 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 GJB1P08034 283 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 ATP4AP20648 1035 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 PTGS1P23219 599 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 ZNF445P59923 1031 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 MDM2Q00987 491 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-220ENST00000555634 GIT2Q14161 759 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 TARBP2Q15633 366 aaKnown RBP12.37□□□□□ -0.43
SHMT2-220ENST00000555634 LRSAM1Q6UWE0 723 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 SFR1Q86XK3 245 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 LMBR1Q8WVP7 490 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 HVCN1Q96D96 273 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 TSG101Q99816 390 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 SH2D3AQ9BRG2 576 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 KMT5AQ9NQR1 393 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 MAN1B1Q9UKM7 699 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 EXOC7Q9UPT5 735 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 PHF24Q9UPV7 400 aa12.37□□□□□ -0.43
SHMT2-220ENST00000555634 A0A087WWV3 80 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 NPHP3-ACAD11A0A0J9YXS1 232 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 A0A1W2PQ45 241 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-220ENST00000555634 A0A1W2PQY0 241 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 BICDL2A1A5D9 508 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 FRMD3A2A2Y4 597 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 LRRIQ4A6NIV6 560 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 BECN2A8MW95 431 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 HAS3O00219 553 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 ZBTB39O15060 712 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 TLR3O15455 904 aaKnown RBP12.36□□□□□ -0.43
SHMT2-220ENST00000555634 MAPTP10636 758 aaKnown RBP12.36□□□□□ -0.43
SHMT2-220ENST00000555634 CYP2C9P11712 490 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 KLRC1P26715 233 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 CASP1P29466 404 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 NAMPTP43490 491 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 PHKA2P46019 1235 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 ZNF131P52739 623 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 CACNB1Q02641 598 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-220ENST00000555634 STRN3Q13033 797 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 ITGA7Q13683 1181 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 TPD52L1Q16890 204 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-220ENST00000555634 CT47A1Q5JQC4 288 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-220ENST00000555634 LHX8Q68G74 356 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 EFCAB12Q6NXP0 572 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 MTHFD1LQ6UB35 978 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 SESTD1Q86VW0 696 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 MYOCDQ8IZQ8 938 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 SPATA20Q8TB22 786 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 LRRC15Q8TF66 581 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 U2AF1L4Q8WU68 220 aaKnown RBP12.36□□□□□ -0.43
SHMT2-220ENST00000555634 ERCC4Q92889 916 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-220ENST00000555634 DNAJC19Q96DA6 116 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 GTF2IRD1Q9UHL9 959 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 OGDHLQ9ULD0 1010 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 PCDHB13Q9Y5F0 798 aa12.36□□□□□ -0.43
SHMT2-220ENST00000555634 GOLGA6L19H0YKK7 550 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 EIF3DO15371 548 aaKnown RBP eCLIP12.35□□□□□ -0.43
SHMT2-220ENST00000555634 STBD1O95210 358 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 SGPL1O95470 568 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 EFNA5P52803 228 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 PEX3P56589 373 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 MORC3Q14149 939 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 MTFR1Q15390 333 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 TMEM132AQ24JP5 1023 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 NBPF20Q3BBV1 942 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 ARSHQ5FYA8 562 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 HS2ST1Q7LGA3 356 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 RHPN2Q8IUC4 686 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 SYCP3Q8IZU3 236 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 GOLGA5Q8TBA6 731 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 TRAPPC12Q8WVT3 735 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 NLRP7Q8WX94 980 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 KAT2BQ92831 832 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 TMEM143Q96AN5 459 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 BICD1Q96G01 975 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 SETD4Q9NVD3 440 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 SUCLA2Q9P2R7 463 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-220ENST00000555634 PCDHA2Q9Y5H9 948 aa12.35□□□□□ -0.43
SHMT2-220ENST00000555634 SMIM35A0A1B0GVV1 85 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 RSPH10B2B2RC85 870 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 FGFR1OPO95684 399 aaKnown RBP12.34□□□□□ -0.43
SHMT2-220ENST00000555634 RSPH10BP0C881 870 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 GJA8P48165 433 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 SARSP49591 514 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms