RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 THEGQ9P2T0 379 aa13.91□□□□□ -0.18
SHMT2-214ENST00000554604 AKT3Q9Y243 479 aa13.91□□□□□ -0.18
SHMT2-214ENST00000554604 VCANP13611 3396 aa13.91□□□□□ -0.18
SHMT2-214ENST00000554604 MMP1P03956 469 aa13.9□□□□□ -0.18
SHMT2-214ENST00000554604 VTNP04004 478 aa13.9□□□□□ -0.18
SHMT2-214ENST00000554604 CLCN3P51790 818 aa13.9□□□□□ -0.18
SHMT2-214ENST00000554604 CRYBB1P53674 252 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-214ENST00000554604 GUCY1B3Q02153 619 aa13.9□□□□□ -0.18
SHMT2-214ENST00000554604 FIBCD1Q8N539 461 aa13.9□□□□□ -0.18
SHMT2-214ENST00000554604 CDHR5Q9HBB8 845 aa13.9□□□□□ -0.18
SHMT2-214ENST00000554604 KCNMB3Q9NPA1 279 aa13.9□□□□□ -0.18
SHMT2-214ENST00000554604 DDX19AQ9NUU7 478 aaKnown RBP13.9□□□□□ -0.18
SHMT2-214ENST00000554604 SEPT9Q9UHD8 586 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-214ENST00000554604 TCF20Q9UGU0 1960 aaKnown RBP13.9□□□□□ -0.18
SHMT2-214ENST00000554604 DENND3A2RUS2 1198 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 TBX3O15119 743 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 GPR182O15218 404 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 LPXNO60711 386 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 STAG3L1P0CL83 205 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 IBSPP21815 317 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-214ENST00000554604 NLRP11P59045 1033 aaKnown RBP13.89□□□□□ -0.19
SHMT2-214ENST00000554604 CCDC173Q0VFZ6 552 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 PPP2R5CQ13362 524 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 BTG3Q14201 252 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-214ENST00000554604 SAFBQ15424 915 aaKnown RBP eCLIP13.89□□□□□ -0.19
SHMT2-214ENST00000554604 MTERF2Q49AM1 385 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 EPC2Q52LR7 807 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 XKR3Q5GH77 459 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 B3GNT9Q6UX72 402 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 DIS3L2Q8IYB7 885 aaKnown RBP13.89□□□□□ -0.19
SHMT2-214ENST00000554604 ZNF710Q8N1W2 664 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 LRRC71Q8N4P6 559 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 BANK1Q8NDB2 785 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 ATXN2LQ8WWM7 1075 aaKnown RBP13.89□□□□□ -0.19
SHMT2-214ENST00000554604 ANP32BQ92688 251 aaKnown RBP13.89□□□□□ -0.19
SHMT2-214ENST00000554604 SCLT1Q96NL6 688 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 USP28Q96RU2 1077 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 PPP1R9BQ96SB3 815 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 OSMRQ99650 979 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 LMCD1Q9NZU5 365 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 LRFN2Q9ULH4 789 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 ST3GAL5Q9UNP4 418 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 NOC2LQ9Y3T9 749 aaKnown RBP13.89□□□□□ -0.19
SHMT2-214ENST00000554604 ADGRA3Q8IWK6 1321 aa13.89□□□□□ -0.19
SHMT2-214ENST00000554604 COL4A6Q14031 1691 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 FAM205CA6NFA0 338 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 BTBD18B2RXH4 712 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 DKC1O60832 514 aaKnown RBP eCLIP13.88□□□□□ -0.19
SHMT2-214ENST00000554604 YEATS4O95619 227 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 LIG1P18858 919 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 DNM2P50570 870 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 PSMC5P62195 406 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 MRPS5P82675 430 aaKnown RBP13.88□□□□□ -0.19
SHMT2-214ENST00000554604 EARS2Q5JPH6 523 aaKnown RBP13.88□□□□□ -0.19
SHMT2-214ENST00000554604 TJAP1Q5JTD0 557 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 FAM43BQ6ZT52 329 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-214ENST00000554604 RTN4RL1Q86UN2 441 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-214ENST00000554604 POTEDQ86YR6 584 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 NPAS4Q8IUM7 802 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 TMEM192Q8IY95 271 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 SLFN12Q8IYM2 578 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 TMEM40Q8WWA1 233 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 LINC01599Q8WXQ3 324 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 SYMPKQ92797 1274 aaKnown RBP13.88□□□□□ -0.19
SHMT2-214ENST00000554604 FUCA2Q9BTY2 467 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 COL25A1Q9BXS0 654 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-214ENST00000554604 NUP62CLQ9H1M0 184 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 ERVK-5Q9HDB9 667 aa13.88□□□□□ -0.19
SHMT2-214ENST00000554604 RNF216Q9NWF9 866 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-214ENST00000554604 FNDC1Q4ZHG4 1894 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-214ENST00000554604 KIAA1671Q9BY89 1806 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 TMEM150BA6NC51 233 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 EML1O00423 815 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 GPR32O75388 356 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 DGKIO75912 1065 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 CTNNB1P35222 781 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 QARSP47897 775 aaKnown RBP13.87□□□□□ -0.19
SHMT2-214ENST00000554604 GPM6BQ13491 265 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 PTPROQ16827 1216 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 UVSSAQ2YD98 709 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 NCAPH2Q6IBW4 605 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 RBM43Q6ZSC3 357 aaKnown RBP13.87□□□□□ -0.19
SHMT2-214ENST00000554604 HAS1Q92839 578 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 TNFRSF25Q93038 417 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 ADAM2Q99965 735 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 SH2D3AQ9BRG2 576 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 NIFKQ9BYG3 293 aaKnown RBP13.87□□□□□ -0.19
SHMT2-214ENST00000554604 TMX1Q9H3N1 280 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 VAV3Q9UKW4 847 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 RWDD3Q9Y3V2 267 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 PCDHB7Q9Y5E2 793 aa13.87□□□□□ -0.19
SHMT2-214ENST00000554604 ARID2Q68CP9 1835 aa13.86□□□□□ -0.19
SHMT2-214ENST00000554604 P4HBP07237 508 aaKnown RBP13.86□□□□□ -0.19
SHMT2-214ENST00000554604 EIF4BP23588 611 aaKnown RBP13.86□□□□□ -0.19
SHMT2-214ENST00000554604 U2AF2P26368 475 aaKnown RBP eCLIP13.86□□□□□ -0.19
SHMT2-214ENST00000554604 SARSP49591 514 aaKnown RBP13.86□□□□□ -0.19
SHMT2-214ENST00000554604 GNL2Q13823 731 aaKnown RBP13.86□□□□□ -0.19
SHMT2-214ENST00000554604 TARBP2Q15633 366 aaKnown RBP13.86□□□□□ -0.19
SHMT2-214ENST00000554604 CALCRLQ16602 461 aa13.86□□□□□ -0.19
SHMT2-214ENST00000554604 AAK1Q2M2I8 961 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms