RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 CLCN3P51790 818 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 PUM1Q14671 1186 aaKnown RBP eCLIP14.73□□□□□ -0.05
VPS29-211ENST00000553128 ODR4Q5SWX8 454 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 TRMT1LQ7Z2T5 733 aaKnown RBP14.73□□□□□ -0.05
VPS29-211ENST00000553128 ZNF654Q8IZM8 581 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 LY9Q9HBG7 655 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 DLL3Q9NYJ7 618 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 EVPLQ92817 2033 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 CEP250Q9BV73 2442 aa14.73□□□□□ -0.05
VPS29-211ENST00000553128 HIP1O00291 1037 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 FGFR4P22455 802 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 SLC26A2P50443 739 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 COL9A3Q14050 684 aaPredicted RBP14.72□□□□□ -0.05
VPS29-211ENST00000553128 ZNF484Q5JVG2 852 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 FAM43BQ6ZT52 329 aaPredicted RBP14.72□□□□□ -0.05
VPS29-211ENST00000553128 GPR149Q86SP6 731 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 ZNF598Q86UK7 904 aaKnown RBP14.72□□□□□ -0.05
VPS29-211ENST00000553128 CABP7Q86V35 215 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 RAB11FIP4Q86YS3 637 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 METTL13Q8N6R0 699 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 CTCFLQ8NI51 663 aaPredicted RBP14.72□□□□□ -0.05
VPS29-211ENST00000553128 ACSF2Q96CM8 615 aaPredicted RBP14.72□□□□□ -0.05
VPS29-211ENST00000553128 HINFPQ9BQA5 517 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 VN1R3Q9BXE9 311 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 COL1A2P08123 1366 aa14.72□□□□□ -0.05
VPS29-211ENST00000553128 OTOGLQ3ZCN5 2332 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 STK25O00506 426 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 DCNP07585 359 aaKnown RBP14.71□□□□□ -0.05
VPS29-211ENST00000553128 SMARCA1P28370 1054 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 NLRP11P59045 1033 aaKnown RBP14.71□□□□□ -0.05
VPS29-211ENST00000553128 CEP55Q53EZ4 464 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 SPECC1Q5M775 1068 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 SWSAP1Q6NVH7 229 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 PDXDC2PQ6P474 469 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 CCDC149Q6ZUS6 474 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 OTOP3Q7RTS5 596 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 RALYLQ86SE5 291 aaKnown RBP14.71□□□□□ -0.05
VPS29-211ENST00000553128 MB21D2Q8IYB1 491 aaPredicted RBP14.71□□□□□ -0.05
VPS29-211ENST00000553128 CCDC82Q8N4S0 544 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 NCOA7Q8NI08 942 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 TMEM169Q96HH4 297 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 MAP3K14Q99558 947 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 ADAMTS10Q9H324 1103 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 SEMA4AQ9H3S1 761 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 ZNF302Q9NR11 478 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 CA14Q9ULX7 337 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 IRAK3Q9Y616 596 aa14.71□□□□□ -0.05
VPS29-211ENST00000553128 DHX15O43143 795 aaKnown RBP14.7□□□□□ -0.06
VPS29-211ENST00000553128 ZC3H11AO75152 810 aaKnown RBP eCLIP14.7□□□□□ -0.06
VPS29-211ENST00000553128 CSDE1O75534 798 aaKnown RBP14.7□□□□□ -0.06
VPS29-211ENST00000553128 DDAH1O94760 285 aa14.7□□□□□ -0.06
VPS29-211ENST00000553128 CTSAP10619 480 aa14.7□□□□□ -0.06
VPS29-211ENST00000553128 ZSCAN20P17040 1043 aaPredicted RBP14.7□□□□□ -0.06
VPS29-211ENST00000553128 KIF5BP33176 963 aa14.7□□□□□ -0.06
VPS29-211ENST00000553128 ALDH7A1P49419 539 aaKnown RBP14.7□□□□□ -0.06
VPS29-211ENST00000553128 SART3Q15020 963 aaKnown RBP14.7□□□□□ -0.06
VPS29-211ENST00000553128 RSPO4Q2I0M5 234 aaPredicted RBP14.7□□□□□ -0.06
VPS29-211ENST00000553128 LONRF3Q496Y0 759 aa14.7□□□□□ -0.06
VPS29-211ENST00000553128 TYW1BQ6NUM6 668 aa14.7□□□□□ -0.06
VPS29-211ENST00000553128 CHD1LQ86WJ1 897 aa14.7□□□□□ -0.06
VPS29-211ENST00000553128 LRRC71Q8N4P6 559 aa14.7□□□□□ -0.06
VPS29-211ENST00000553128 LINC01465Q8N7H1 131 aa14.7□□□□□ -0.06
VPS29-211ENST00000553128 DLGAP2Q9P1A6 1054 aa14.7□□□□□ -0.06
VPS29-211ENST00000553128 U3KPZ7 1027 aaPredicted RBP14.7□□□□□ -0.06
VPS29-211ENST00000553128 C2orf16Q68DN1 1984 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 A0A0U1RQF3 1178 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 POTEMA6NI47 508 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 MEIS1O00470 390 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 B4GALT3O60512 393 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 SP9P0CG40 484 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 PTPN14Q15678 1187 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 LETM2Q2VYF4 491 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 FAM160B1Q5W0V3 765 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 POTEGQ6S5H5 508 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 HEATR3Q7Z4Q2 680 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 DDX53Q86TM3 631 aaKnown RBP14.69□□□□□ -0.06
VPS29-211ENST00000553128 SMC5Q8IY18 1101 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 TMEM87AQ8NBN3 555 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 RUBCNQ92622 972 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 LPPQ93052 612 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 IGSF21Q96ID5 467 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 LZTS2Q9BRK4 669 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 SFXN1Q9H9B4 322 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 TBC1D17Q9HA65 648 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 WNT16Q9UBV4 365 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 AKT3Q9Y243 479 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 GPR179Q6PRD1 2367 aa14.69□□□□□ -0.06
VPS29-211ENST00000553128 TPRP12270 2363 aaKnown RBP14.68□□□□□ -0.06
VPS29-211ENST00000553128 MEIS3P2A8K0S8 358 aa14.68□□□□□ -0.06
VPS29-211ENST00000553128 GLULP15104 373 aa14.68□□□□□ -0.06
VPS29-211ENST00000553128 EIF4BP23588 611 aaKnown RBP14.68□□□□□ -0.06
VPS29-211ENST00000553128 CLCN4P51793 760 aa14.68□□□□□ -0.06
VPS29-211ENST00000553128 NUCB1Q02818 461 aa14.68□□□□□ -0.06
VPS29-211ENST00000553128 CKAP2LQ8IYA6 745 aa14.68□□□□□ -0.06
VPS29-211ENST00000553128 SUMF1Q8NBK3 374 aa14.68□□□□□ -0.06
VPS29-211ENST00000553128 ST13P5Q8NFI4 369 aaPredicted RBP14.68□□□□□ -0.06
VPS29-211ENST00000553128 ANO3Q9BYT9 981 aa14.68□□□□□ -0.06
VPS29-211ENST00000553128 NRDE2Q9H7Z3 1164 aa14.68□□□□□ -0.06
VPS29-211ENST00000553128 DNAJB4Q9UDY4 337 aa14.68□□□□□ -0.06
VPS29-211ENST00000553128 SPDYE4A6NLX3 237 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms