RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 TBC1D8BQ0IIM8 1120 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 MTERF2Q49AM1 385 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 PLPP4Q5VZY2 271 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 MIER3Q7Z3K6 550 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 TRIM22Q8IYM9 498 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 VN1R2Q8NFZ6 395 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 NLRP7Q8WX94 980 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 RIT2Q99578 217 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 APOL5Q9BWW9 433 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 TMEM117Q9H0C3 514 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 ELAC1Q9H777 363 aaKnown RBP12.94□□□□□ -0.34
NEK3-204ENST00000552973 SH3GLB2Q9NR46 395 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 SEPT9Q9UHD8 586 aaPredicted RBP12.94□□□□□ -0.34
NEK3-204ENST00000552973 PSMD10O75832 226 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 EYA4O95677 639 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 LAG3P18627 525 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 SFNP31947 248 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 JAK3P52333 1124 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 COASYQ13057 564 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 Q4G0T1 1027 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 ECHDC2Q86YB7 292 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 ABI1Q8IZP0 508 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 BLIDQ8IZY5 108 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 SMRP1Q8NCR6 262 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 POP1Q99575 1024 aaKnown RBP12.93□□□□□ -0.34
NEK3-204ENST00000552973 KCNJ14Q9UNX9 436 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 USP15Q9Y4E8 981 aaPredicted RBP12.93□□□□□ -0.34
NEK3-204ENST00000552973 ARIH1Q9Y4X5 557 aaPredicted RBP12.93□□□□□ -0.34
NEK3-204ENST00000552973 CYP46A1Q9Y6A2 500 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 NLRC5Q86WI3 1866 aa12.93□□□□□ -0.34
NEK3-204ENST00000552973 DDX11L8A8MPP1 907 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 HIDE1A8MVS5 230 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 FSCN2O14926 492 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 DEXIO95424 95 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 DARSP14868 501 aaKnown RBP12.92□□□□□ -0.34
NEK3-204ENST00000552973 TARBP2Q15633 366 aaKnown RBP12.92□□□□□ -0.34
NEK3-204ENST00000552973 DUSP6Q16828 381 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 RALGAPA2Q2PPJ7 1873 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 LONRF3Q496Y0 759 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 CLLU1OSQ5K130 101 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 LLGL2Q6P1M3 1020 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 KCNT2Q6UVM3 1135 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 FAM43BQ6ZT52 329 aaPredicted RBP12.92□□□□□ -0.34
NEK3-204ENST00000552973 HFE2Q6ZVN8 426 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 HELQQ8TDG4 1101 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 MRPS27Q92552 414 aaKnown RBP12.92□□□□□ -0.34
NEK3-204ENST00000552973 RPGRIP1Q96KN7 1286 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 TCF25Q9BQ70 676 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 ENTPD7Q9NQZ7 604 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 PUF60Q9UHX1 559 aaKnown RBP12.92□□□□□ -0.34
NEK3-204ENST00000552973 MYO7AQ13402 2215 aa12.92□□□□□ -0.34
NEK3-204ENST00000552973 BRWD1Q9NSI6 2320 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 A0A087WZ62 844 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 NT5C1B-RDH14C9J2C7 533 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 M0R2N6 131 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 HOXA2O43364 376 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 STBD1O95210 358 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 HOXD11P31277 338 aaPredicted RBP12.91□□□□□ -0.34
NEK3-204ENST00000552973 PLCB3Q01970 1234 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 NPY5RQ15761 445 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 INF2Q27J81 1249 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 LETM2Q2VYF4 491 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 XKR3Q5GH77 459 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 HERC4Q5GLZ8 1057 aaPredicted RBP12.91□□□□□ -0.34
NEK3-204ENST00000552973 KSR1Q8IVT5 923 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 LRRC43Q8N309 656 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 ZNF274Q96GC6 653 aaPredicted RBP12.91□□□□□ -0.34
NEK3-204ENST00000552973 ZNF558Q96NG5 402 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 FDXACB1Q9BRP7 624 aaPredicted RBP12.91□□□□□ -0.34
NEK3-204ENST00000552973 NIFKQ9BYG3 293 aaKnown RBP12.91□□□□□ -0.34
NEK3-204ENST00000552973 GCOM2Q9BZD3 368 aaPredicted RBP12.91□□□□□ -0.34
NEK3-204ENST00000552973 C22orf23Q9BZE7 217 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 PDRG1Q9NUG6 133 aa12.91□□□□□ -0.34
NEK3-204ENST00000552973 CYP3A7-CYP3A51PA0A087WV96 503 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 A0A0U1RQF3 1178 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 EML1O00423 815 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 SLC37A4O43826 429 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 SP100P23497 879 aaPredicted RBP12.9□□□□□ -0.34
NEK3-204ENST00000552973 CYP3A7P24462 503 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 CA8P35219 290 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 TECP42680 631 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 KRT17Q04695 432 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 NONOQ15233 471 aaKnown RBP eCLIP12.9□□□□□ -0.34
NEK3-204ENST00000552973 PLA2G4FQ68DD2 849 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 CPLX2Q6PUV4 134 aaKnown RBP12.9□□□□□ -0.34
NEK3-204ENST00000552973 B3GNT9Q6UX72 402 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 TMC7Q7Z402 723 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 ALYREFQ86V81 257 aaKnown RBP12.9□□□□□ -0.34
NEK3-204ENST00000552973 RHPN2Q8IUC4 686 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 ETNPPLQ8TBG4 499 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 LPPQ93052 612 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 CEP89Q96ST8 783 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 PHF7Q9BWX1 381 aaPredicted RBP12.9□□□□□ -0.34
NEK3-204ENST00000552973 SLKQ9H2G2 1235 aaPredicted RBP12.9□□□□□ -0.34
NEK3-204ENST00000552973 GJB4Q9NTQ9 266 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 SPG21Q9NZD8 308 aa12.9□□□□□ -0.34
NEK3-204ENST00000552973 SUCLA2Q9P2R7 463 aaPredicted RBP12.9□□□□□ -0.34
NEK3-204ENST00000552973 DDX25Q9UHL0 483 aaKnown RBP12.9□□□□□ -0.34
NEK3-204ENST00000552973 NCOR1O75376 2440 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 IGKV6-21A0A0C4DH24 114 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms