RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 SMARCAD1Q9H4L7 1026 aa7.43□□□□□ -1.22
SRGAP1-206ENST00000543397 VPS18Q9P253 973 aa7.43□□□□□ -1.22
SRGAP1-206ENST00000543397 DDX41Q9UJV9 622 aaKnown RBP7.43□□□□□ -1.22
SRGAP1-206ENST00000543397 MAD1L1Q9Y6D9 718 aa7.43□□□□□ -1.22
SRGAP1-206ENST00000543397 IKBKBO14920 756 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 TDP2O95551 362 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CLCN1P35523 988 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 EPHB1P54762 984 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 PSMC1P62191 440 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 LMNB2Q03252 620 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 TSTA3Q13630 321 aaPredicted RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 EPHA7Q15375 998 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 RNF219Q5W0B1 726 aaPredicted RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CYFIP1Q7L576 1253 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CHST13Q8NET6 341 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 FAM213AQ9BRX8 229 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 DDX23Q9BUQ8 820 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 FBXO2Q9UK22 296 aaPredicted RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 I3L4J1 428 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CTSHP09668 335 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CAPN2P17655 700 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CDC27P30260 824 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 KRT20P35900 424 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 RECQLP46063 649 aaPredicted RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 GPC3P51654 580 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 EFNA5P52803 228 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 RASSF7Q02833 373 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 ZNF394Q53GI3 561 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 GNASQ5JWF2 1037 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 DENND2CQ68D51 928 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 FAM133AQ8N9E0 248 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CHAMP1Q96JM3 812 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 THAP9Q9H5L6 903 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CACYBPQ9HB71 228 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 PREX1Q8TCU6 1659 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 SPATA31D1Q6ZQQ2 1576 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 HIP1RO75146 1068 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CPB1P15086 417 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 RHBDL3P58872 404 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 SLC10A5Q5PT55 438 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 ERICH1Q86X53 443 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 RNF149Q8NC42 400 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 OXER1Q8TDS5 423 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CDKL2Q92772 493 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 PBXIP1Q96AQ6 731 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 TTC1Q99614 292 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 NDST4Q9H3R1 872 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 NGRNQ9NPE2 291 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 TYW1Q9NV66 732 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 PIN4Q9Y237 131 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 HEXIM1O94992 359 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 ATF2P15336 505 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CXCL9Q07325 125 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 EHHADHQ08426 723 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 VEPH1Q14D04 833 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CCDC144BQ3MJ40 725 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 XKR3Q5GH77 459 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 IER5Q5VY09 327 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 ICE2Q659A1 982 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 CCDC121Q6ZUS5 278 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 BBOF1Q8ND07 529 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 ENOX1Q8TC92 643 aaKnown RBP7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 RAD54LQ92698 747 aa7.42□□□□□ -1.22
SRGAP1-206ENST00000543397 EIF3CLB5ME19 914 aaKnown RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 MCF2LO15068 1137 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 TRAPPC3O43617 180 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 CD2BP2O95400 341 aaKnown RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 ZNF18P17022 549 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 SATB1Q01826 763 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 PDIA6Q15084 440 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 KRT71Q3SY84 523 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 RNF180Q86T96 592 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 PARD3BQ8TEW8 1205 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 ATG4CQ96DT6 458 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 PRMT6Q96LA8 375 aaPredicted RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 EIF3CQ99613 913 aaKnown RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 POLLQ9UGP5 575 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 SLC4A1P02730 911 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 RASA1P20936 1047 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 POU5F1Q01860 360 aaKnown RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 PPP4R1Q8TF05 950 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 ZKSCAN4Q969J2 545 aaPredicted RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 VMP1Q96GC9 406 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 ZMAT2Q96NC0 199 aaKnown RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 EIF2AK1Q9BQI3 630 aaKnown RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 PLEKHA4Q9H4M7 779 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 CALCOCO1Q9P1Z2 691 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 PVALEFA0A1B0GWK0 134 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 SGK1O00141 431 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 DDNO94850 711 aaPredicted RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 PARNO95453 639 aaKnown RBP7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 NR3C1P04150 777 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 KRT1P04264 644 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 ACTN1P12814 892 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 SYCP2LQ5T4T6 812 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 NAA35Q5VZE5 725 aa7.41□□□□□ -1.22
SRGAP1-206ENST00000543397 C11orf96Q7Z7L8 435 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms