RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TCEANC2Q96MN5 208 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 IRF2BPLQ9H1B7 796 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 FAM217BQ9NTX9 383 aaPredicted RBP20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 SPG21Q9NZD8 308 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 SORCS3Q9UPU3 1222 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 C2orf71A6NGG8 1288 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 PROB1E7EW31 1015 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 GALR2O43603 387 aaPredicted RBP20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 CDC27P30260 824 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 NUBP1P53384 320 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 EXOSC10Q01780 885 aaKnown RBP20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 KRT17Q04695 432 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 ZNF746Q6NUN9 644 aaPredicted RBP20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 SLC39A11Q8N1S5 342 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 TMEM105Q8N8V8 129 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 MRPL43Q8N983 215 aaKnown RBP20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 ZNF577Q9BSK1 485 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 ADAM7Q9H2U9 754 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 TBC1D22BQ9NU19 505 aa20.2■□□□□ 0.82
CLSTN3-214ENST00000542663 DCHS1Q96JQ0 3298 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 ZBTB43O43298 467 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 CLASP2O75122 1294 aaKnown RBP20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 EIF4BP23588 611 aaKnown RBP20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 ITIH3Q06033 890 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 MTMR3Q13615 1198 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 SMC1AQ14683 1233 aaKnown RBP20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 TPRNQ4KMQ1 711 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 EFCAB12Q6NXP0 572 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 ZNF598Q86UK7 904 aaKnown RBP20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 SMAP1Q8IYB5 467 aaPredicted RBP20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 UBALD2Q8IYN6 164 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 ABI1Q8IZP0 508 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 LRRC71Q8N4P6 559 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 ZNF668Q96K58 619 aaPredicted RBP20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 GLT8D2Q9H1C3 349 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 GABBR1Q9UBS5 961 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 AKT3Q9Y243 479 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 PCDHA10Q9Y5I2 948 aa20.19■□□□□ 0.82
CLSTN3-214ENST00000542663 MAGEB2O15479 319 aa20.18■□□□□ 0.82
CLSTN3-214ENST00000542663 PSAPP07602 524 aa20.18■□□□□ 0.82
CLSTN3-214ENST00000542663 WEE2P0C1S8 567 aa20.18■□□□□ 0.82
CLSTN3-214ENST00000542663 ZSCAN20P17040 1043 aaPredicted RBP20.18■□□□□ 0.82
CLSTN3-214ENST00000542663 CES5AQ6NT32 575 aa20.18■□□□□ 0.82
CLSTN3-214ENST00000542663 HELQQ8TDG4 1101 aa20.18■□□□□ 0.82
CLSTN3-214ENST00000542663 YTHDC1Q96MU7 727 aaKnown RBP20.18■□□□□ 0.82
CLSTN3-214ENST00000542663 NECTIN4Q96NY8 510 aa20.18■□□□□ 0.82
CLSTN3-214ENST00000542663 CEP131Q9UPN4 1083 aa20.18■□□□□ 0.82
CLSTN3-214ENST00000542663 A0A0U1RQF3 1178 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 NT5C1B-RDH14C9J2C7 533 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 ZNF862O60290 1169 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 FGFR4P22455 802 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 GPC3P51654 580 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 SETQ01105 290 aaPredicted RBP20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 KANK3Q6NY19 840 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 ASCL5Q7RTU5 278 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 RNF169Q8NCN4 708 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 FEZF2Q8TBJ5 459 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 MAP7D2Q96T17 732 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 ANO2Q9NQ90 1003 aa20.17■□□□□ 0.82
CLSTN3-214ENST00000542663 GOLGA8AA7E2F4 631 aa20.16■□□□□ 0.82
CLSTN3-214ENST00000542663 GOLGA8BA8MQT2 603 aa20.16■□□□□ 0.82
CLSTN3-214ENST00000542663 ASGR2P07307 311 aa20.16■□□□□ 0.82
CLSTN3-214ENST00000542663 METAP2P50579 478 aaKnown RBP eCLIP20.16■□□□□ 0.82
CLSTN3-214ENST00000542663 PFKFB3Q16875 520 aaPredicted RBP20.16■□□□□ 0.82
CLSTN3-214ENST00000542663 C12orf76Q8N812 135 aaPredicted RBP20.16■□□□□ 0.82
CLSTN3-214ENST00000542663 LENG9Q96B70 501 aa20.16■□□□□ 0.82
CLSTN3-214ENST00000542663 FAM167AQ96KS9 214 aa20.16■□□□□ 0.82
CLSTN3-214ENST00000542663 ZMYND12Q9H0C1 365 aa20.16■□□□□ 0.82
CLSTN3-214ENST00000542663 KLF18A0A0U1RQI7 1052 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 ESYT2A0FGR8 921 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 EOMESO95936 686 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 DARSP14868 501 aaKnown RBP20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 NBL1P41271 181 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 MTHFRP42898 656 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 BCAR1P56945 870 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 ADCK5Q3MIX3 580 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 RARS2Q5T160 578 aaKnown RBP20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 TMEM173Q86WV6 379 aaPredicted RBP20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 AUTS2Q8WXX7 1259 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 ZBP1Q9H171 429 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 FAM186AA6NE01 2351 aa20.15■□□□□ 0.82
CLSTN3-214ENST00000542663 PRR23AA6NEV1 266 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 EDIL3O43854 480 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 CSDE1O75534 798 aaKnown RBP20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 CXCL14O95715 111 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 OATP04181 439 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 EPCAMP16422 314 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 TMOD1P28289 359 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 UGCGQ16739 394 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 PRR16Q569H4 304 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 KIAA1841Q6NSI8 718 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 DHX32Q7L7V1 743 aaKnown RBP20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 RASEFQ8IZ41 740 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 ZDHHC14Q8IZN3 488 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 ZNF710Q8N1W2 664 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 LIMD1Q9UGP4 676 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 SAMM50Q9Y512 469 aa20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 PTPRZ1P23471 2315 aaPredicted RBP20.14■□□□□ 0.81
CLSTN3-214ENST00000542663 RIF1Q5UIP0 2472 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 CIITAP33076 1130 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms