RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ATXN8OSP0DMR3 200 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 XRCC6P12956 609 aaKnown RBP eCLIP10.87□□□□□ -0.67
YBX3-212ENST00000542002 DARSP14868 501 aaKnown RBP10.87□□□□□ -0.67
YBX3-212ENST00000542002 EIF4BP23588 611 aaKnown RBP10.87□□□□□ -0.67
YBX3-212ENST00000542002 RPA1P27694 616 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 RARRES1P49788 294 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 GRIN1Q05586 938 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 PAK2Q13177 524 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 ADGRE1Q14246 886 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 DSC3Q14574 896 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 OTUD6AQ7L8S5 288 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 RHPN2Q8IUC4 686 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 SPRYD3Q8NCJ5 442 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 MYLIPQ8WY64 445 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 MAP7D2Q96T17 732 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 FDXACB1Q9BRP7 624 aaPredicted RBP10.87□□□□□ -0.67
YBX3-212ENST00000542002 ZBED2Q9BTP6 218 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 TSPYL2Q9H2G4 693 aaPredicted RBP10.87□□□□□ -0.67
YBX3-212ENST00000542002 PRDM12Q9H4Q4 367 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 SLC28A3Q9HAS3 691 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 IFT122Q9HBG6 1241 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 POLD4Q9HCU8 107 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 TUFT1Q9NNX1 390 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 LRWD1Q9UFC0 647 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 CLIC4Q9Y696 253 aa10.87□□□□□ -0.67
YBX3-212ENST00000542002 SPTBN5Q9NRC6 3674 aaKnown RBP10.87□□□□□ -0.67
YBX3-212ENST00000542002 SIP14410 1827 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 TMEM265A0A087WTH1 108 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 SRGAP2CP0DJJ0 459 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 PDCP20941 246 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 PRPHP41219 470 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 POLGP54098 1239 aaPredicted RBP10.86□□□□□ -0.67
YBX3-212ENST00000542002 FAM189BP81408 668 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 LAMTOR4Q0VGL1 99 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 EMC2Q15006 297 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 PPP2R2DQ66LE6 453 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 DTHD1Q6ZMT9 781 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 BRAPQ7Z569 592 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 NEK9Q8TD19 979 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 NLRP7Q8WX94 980 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 SLC7A3Q8WY07 619 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 ADAM2Q99965 735 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 MINDY3Q9H8M7 445 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 GPRC5CQ9NQ84 441 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 RGS18Q9NS28 235 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 KIAA1024Q9UPX6 916 aa10.86□□□□□ -0.67
YBX3-212ENST00000542002 LINC01553A4QN01 128 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 C9IYK1 514 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 LAD1O00515 517 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 GPR182O15218 404 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 STX6O43752 255 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 LINC00271P0C7V0 271 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 ARL2P36404 184 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 CCT6AP40227 531 aaKnown RBP10.85□□□□□ -0.67
YBX3-212ENST00000542002 RFC5P40937 340 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 GATMP50440 423 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 DNM2P50570 870 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 PKP1Q13835 747 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 PTPAQ15257 358 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 SF3A1Q15459 793 aaKnown RBP10.85□□□□□ -0.67
YBX3-212ENST00000542002 MAEAQ7L5Y9 396 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 KCNK18Q7Z418 384 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 HSCBQ8IWL3 235 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 ASAP3Q8TDY4 903 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 LRRC15Q8TF66 581 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 ZNF689Q96CS4 500 aaPredicted RBP10.85□□□□□ -0.67
YBX3-212ENST00000542002 NLRP4Q96MN2 994 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 NACC1Q96RE7 527 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 FTHL17Q9BXU8 183 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 RC3H2Q9HBD1 1191 aaKnown RBP10.85□□□□□ -0.67
YBX3-212ENST00000542002 DBR1Q9UK59 544 aaKnown RBP10.85□□□□□ -0.67
YBX3-212ENST00000542002 STXBP5LQ9Y2K9 1186 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 PPME1Q9Y570 386 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 INSL6Q9Y581 213 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 COL4A3BPQ9Y5P4 624 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 KAT6AQ92794 2004 aa10.85□□□□□ -0.67
YBX3-212ENST00000542002 PTPRSQ13332 1948 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 VWA3AA6NCI4 1184 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 E9PMD0 336 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 LPXNO60711 386 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 DGAT1O75907 488 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 DGKIO75912 1065 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 GLRA2P23416 452 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 HOXA11P31270 313 aaPredicted RBP10.84□□□□□ -0.67
YBX3-212ENST00000542002 FAM102BQ5T8I3 360 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 ARL6IP4Q66PJ3 421 aaKnown RBP10.84□□□□□ -0.67
YBX3-212ENST00000542002 ERMNQ8TAM6 284 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 SNX29Q8TEQ0 813 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 PNMA5Q96PV4 448 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 PLIN2Q99541 437 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 MTRQ99707 1265 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 JPH2Q9BR39 696 aaPredicted RBP10.84□□□□□ -0.67
YBX3-212ENST00000542002 C17orf80Q9BSJ5 609 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 GCOM2Q9BZD3 368 aaPredicted RBP10.84□□□□□ -0.67
YBX3-212ENST00000542002 DDX19AQ9NUU7 478 aaKnown RBP10.84□□□□□ -0.67
YBX3-212ENST00000542002 MYH9P35579 1960 aaKnown RBP10.84□□□□□ -0.67
YBX3-212ENST00000542002 WDR81Q562E7 1941 aa10.84□□□□□ -0.67
YBX3-212ENST00000542002 DENND3A2RUS2 1198 aa10.83□□□□□ -0.68
YBX3-212ENST00000542002 USO1O60763 962 aaKnown RBP10.83□□□□□ -0.68
YBX3-212ENST00000542002 IBSPP21815 317 aaPredicted RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms