RNA–Protein interactions for RNA: ENST00000540812.1

TRIM65-203, Transcript of tripartite motif containing 65, human

TSL 2

Gene TRIM65, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM65-203	ENST00000540812	DUSP6	Q16828	381 aa		18.34	■□□□□ 0.53
TRIM65-203	ENST00000540812	TMEM117	Q9H0C3	514 aa		18.34	■□□□□ 0.53
TRIM65-203	ENST00000540812	NRBP2	Q9NSY0	501 aa		18.34	■□□□□ 0.53
TRIM65-203	ENST00000540812	WDR81	Q562E7	1941 aa		18.33	■□□□□ 0.53
TRIM65-203	ENST00000540812	LOC730098	B7Z3J9	87 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	LAG3	P18627	525 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	FGFR4	P22455	802 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	EIF4B	P23588	611 aa	Known RBP	18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	PBX3	P40426	434 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	GPC3	P51654	580 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	USP11	P51784	963 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	NLRP5	P59047	1200 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	DRP2	Q13474	957 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	TOB2	Q14106	344 aa	Predicted RBP	18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	LRCH2	Q5VUJ6	765 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	PLPP4	Q5VZY2	271 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	ECHDC2	Q86YB7	292 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	TBCK	Q8TEA7	893 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	RIT2	Q99578	217 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	TEKT3	Q9BXF9	490 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	ZNF318	Q5VUA4	2279 aa		18.33	■□□□□ 0.52
TRIM65-203	ENST00000540812	TMEM150B	A6NC51	233 aa		18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	TDP2	O95551	362 aa		18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	DARS	P14868	501 aa	Known RBP	18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	ZSCAN20	P17040	1043 aa	Predicted RBP	18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	PSMA5	P28066	241 aa		18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	PLCB3	Q01970	1234 aa		18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	CLLU1OS	Q5K130	101 aa		18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	MRPS27	Q92552	414 aa	Known RBP	18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	LARP6	Q9BRS8	491 aa	Known RBP	18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	SH3GLB2	Q9NR46	395 aa		18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	PCDHA4	Q9UN74	947 aa		18.32	■□□□□ 0.52
TRIM65-203	ENST00000540812	CSDE1	O75534	798 aa	Known RBP	18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	PSMD10	O75832	226 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	STBD1	O95210	358 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	SFN	P31947	248 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	JAK3	P52333	1124 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	TARBP2	Q15633	366 aa	Known RBP	18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812		Q4G0T1	1027 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	KCNT2	Q6UVM3	1135 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	RUFY3	Q7L099	469 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	RNF169	Q8NCN4	708 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	SUSD6	Q92537	303 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	CEP89	Q96ST8	783 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	CDCA3	Q99618	268 aa	Predicted RBP	18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	SEPT9	Q9UHD8	586 aa	Predicted RBP	18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	LZTS1	Q9Y250	596 aa		18.31	■□□□□ 0.52
TRIM65-203	ENST00000540812	HIDE1	A8MVS5	230 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	HOXA2	O43364	376 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	REC8	O95072	547 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	ATF7	P17544	494 aa	Predicted RBP	18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	SSRP1	Q08945	709 aa	Known RBP	18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	TBC1D8B	Q0IIM8	1120 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	KCNC3	Q14003	757 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	CBX2	Q14781	532 aa	Predicted RBP	18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	NPY5R	Q15761	445 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	MTERF2	Q49AM1	385 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	PDE12	Q6L8Q7	609 aa	Known RBP	18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	B3GNT9	Q6UX72	402 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	MIER3	Q7Z3K6	550 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	ZNF598	Q86UK7	904 aa	Known RBP	18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	ABI1	Q8IZP0	508 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	ZNF710	Q8N1W2	664 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	LRRC43	Q8N309	656 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	NLRP7	Q8WX94	980 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	EDA	Q92838	391 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	FBXL18	Q96ME1	805 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	ZNF558	Q96NG5	402 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	SCLT1	Q96NL6	688 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	AIFM3	Q96NN9	605 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	TCF25	Q9BQ70	676 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	SH2D3A	Q9BRG2	576 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	PHF7	Q9BWX1	381 aa	Predicted RBP	18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	ZSWIM6	Q9HCJ5	1215 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	ENTPD7	Q9NQZ7	604 aa		18.3	■□□□□ 0.52
TRIM65-203	ENST00000540812	CYP3A7-CYP3A51P	A0A087WV96	503 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812		M0R2N6	131 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	CYP3A7	P24462	503 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	TMEM184A	Q6ZMB5	413 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	ALYREF	Q86V81	257 aa	Known RBP	18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	TRIM22	Q8IYM9	498 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	RDM1	Q8NG50	284 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	ETNPPL	Q8TBG4	499 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	HELQ	Q8TDG4	1101 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	RPGRIP1	Q96KN7	1286 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	APOL5	Q9BWW9	433 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	NIFK	Q9BYG3	293 aa	Known RBP	18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	PPP4R2	Q9NY27	417 aa		18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812	PUF60	Q9UHX1	559 aa	Known RBP	18.29	■□□□□ 0.52
TRIM65-203	ENST00000540812		A0A0U1RQF3	1178 aa		18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	TEC	P42680	631 aa		18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	ANKRD54	Q6NXT1	300 aa		18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	LLGL2	Q6P1M3	1020 aa		18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	SYCE2	Q6PIF2	218 aa		18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	BLID	Q8IZY5	108 aa		18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	MFSD14A	Q96MC6	490 aa		18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	MBOAT7	Q96N66	472 aa		18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	S1PR5	Q9H228	398 aa		18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	NGRN	Q9NPE2	291 aa	Known RBP	18.28	■□□□□ 0.52
TRIM65-203	ENST00000540812	IGKV6-21	A0A0C4DH24	114 aa		18.27	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms