RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 FDPSP14324 419 aaKnown RBP10.2□□□□□ -0.78
CLIP1-214ENST00000540539 DCTN2Q13561 401 aaKnown RBP10.2□□□□□ -0.78
CLIP1-214ENST00000540539 HLTFQ14527 1009 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLIP1-214ENST00000540539 WDR59Q6PJI9 974 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 ZNF804AQ7Z570 1209 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 CCDC127Q96BQ5 260 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 MS4A14Q96JA4 679 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 PRMT1Q99873 361 aaKnown RBP10.2□□□□□ -0.78
CLIP1-214ENST00000540539 GPBP1L1Q9HC44 474 aaPredicted RBP10.2□□□□□ -0.78
CLIP1-214ENST00000540539 KCNH3Q9ULD8 1083 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 CCPG1Q9ULG6 757 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 NOX1Q9Y5S8 564 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 PRAMEF22A3QJZ6 481 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 KIF28PB7ZC32 967 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 HGSO14964 777 aaPredicted RBP10.2□□□□□ -0.78
CLIP1-214ENST00000540539 SUN1O94901 812 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 HOXB7P09629 217 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 IGHMBP2P38935 993 aaKnown RBP10.2□□□□□ -0.78
CLIP1-214ENST00000540539 SERPINB8P50452 374 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 RELAQ04206 551 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 KRT32Q14532 448 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 C11orf74Q86VG3 221 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 ANKLE1Q8NAG6 615 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 PPFIBP2Q8ND30 876 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 SELENOSQ9BQE4 189 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 LRMDAQ9H2I8 198 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 BHMT2Q9H2M3 363 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 THAP9Q9H5L6 903 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 CCDC134Q9H6E4 229 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 DCLRE1BQ9H816 532 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 PSTPIP2Q9H939 334 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 TRPC7Q9HCX4 862 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 CLIC5Q9NZA1 410 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 SEL1LQ9UBV2 794 aa10.2□□□□□ -0.78
CLIP1-214ENST00000540539 TMA7Q9Y2S6 64 aaKnown RBP10.2□□□□□ -0.78
CLIP1-214ENST00000540539 CTDP1Q9Y5B0 961 aaPredicted RBP10.2□□□□□ -0.78
CLIP1-214ENST00000540539 C5P01031 1676 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 IQCA1LA6NCM1 817 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 ECE2O60344 883 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 ADAM23O75077 832 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 SNRPA1P09661 255 aaKnown RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 IFNAR2P48551 515 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 MSLNQ13421 630 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 WASHC2DQ5SRD0 308 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 KBTBD2Q8IY47 623 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 SH3TC2Q8TF17 1288 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 UBLCP1Q8WVY7 318 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 LRRC45Q96CN5 670 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 PPP1R10Q96QC0 940 aaKnown RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 ASCC2Q9H1I8 757 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 DENND2DQ9H6A0 471 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 SEC31BQ9NQW1 1179 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 FBXL5Q9UKA1 691 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 MED23Q9ULK4 1368 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 TTC26A0AVF1 554 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 NCK2O43639 380 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 DGKIO75912 1065 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 OR6B1O95007 311 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 GJB6O95452 261 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 LMNB2Q03252 620 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 PPIDQ08752 370 aaKnown RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 KRT31Q15323 416 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 CCDC6Q16204 474 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 WDR72Q3MJ13 1102 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 DEPDC1Q5TB30 811 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 CCSAPQ6IQ19 270 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 ZNF589Q86UQ0 364 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 GRAMD1CQ8IYS0 662 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 SPATA17Q96L03 361 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 CCDC42Q96M95 316 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 METTL5Q9NRN9 209 aaKnown RBP10.19□□□□□ -0.78
CLIP1-214ENST00000540539 GJB4Q9NTQ9 266 aa10.19□□□□□ -0.78
CLIP1-214ENST00000540539 PASKQ96RG2 1323 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 CACNA1FO60840 1977 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 TRIM64CA6NLI5 447 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 O00370 1275 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 TTI1O43156 1089 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 MMP13P45452 471 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 NEK3P51956 506 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 CYP27A1Q02318 531 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 SEPT7Q16181 437 aaKnown RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 ZCWPW2Q504Y3 356 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 METTL21CQ5VZV1 264 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 DHX32Q7L7V1 743 aaKnown RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 AGGF1Q8N302 714 aaeCLIP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 TMEM237Q96Q45 408 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 KRT12Q99456 494 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 DNAJC7Q99615 494 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 MLXIPQ9HAP2 919 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 INTS9Q9NV88 658 aaKnown RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 FGFR1OP2Q9NVK5 253 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 IL1RAPL1Q9NZN1 696 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 SAP30BPQ9UHR5 308 aaKnown RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 RFX7Q2KHR2 1363 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 SEMA3EO15041 775 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 CD44P16070 742 aaKnown RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 RGS2P41220 211 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 TMED10P49755 219 aaKnown RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 ERVK-9P63128 1117 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 GIT2Q14161 759 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms