RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 C11orf57Q6ZUT1 292 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 FRA10AC1Q70Z53 315 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 ZC3H18Q86VM9 953 aaKnown RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 TMCO5AQ8N6Q1 288 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 MTBPQ96DY7 904 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 MAGEB5Q9BZ81 275 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 EDEM3Q9BZQ6 932 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 SOWAHDA6NJG2 315 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 SNX2O60749 519 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 FGGP02679 453 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ATXN8OSP0DMR3 200 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ZNF18P17022 549 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 PSMA2P25787 234 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 GOLGA8FQ08AF8 430 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 GOLGA8DPQ0D2H9 430 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 DRP2Q13474 957 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 Q3C1V9 767 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 PDXDC2PQ6P474 469 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 DHX36Q9H2U1 1008 aaKnown RBP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 SAYSD1Q9NPB0 183 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ADAMTS1Q9UHI8 967 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 TRIM33Q9UPN9 1127 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 RNF103-CHMP3A0A140T963 221 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ZRANB2O95218 330 aaKnown RBP eCLIP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 CYP21A2P08686 494 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 CLCN6P51797 869 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 HSPA2P54652 639 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 CAV1Q03135 178 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ZNF667Q5HYK9 610 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 DSTYKQ6XUX3 929 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ASPSCR1Q9BZE9 553 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 SRPRBQ9Y5M8 271 aaKnown RBP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 UBR1Q8IWV7 1749 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 MAP3K15Q6ZN16 1313 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 SYNGAP1Q96PV0 1343 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 CHUKO15111 745 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ANP32DO95626 131 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ESRRBO95718 433 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 MMEP08473 750 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ARL6IP4Q66PJ3 421 aaKnown RBP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 GANCQ8TET4 914 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ULK4Q96C45 1275 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 NAF1Q96HR8 494 aaKnown RBP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 AP1M1Q9BXS5 423 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 SAMSN1Q9NSI8 373 aaKnown RBP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 PRKAG2Q9UGJ0 569 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ITM2BQ9Y287 266 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 USP31Q70CQ4 1352 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 PLEKHG3A1L390 1219 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 BNIP3LO60238 219 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 EFCAB14O75071 495 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 TBC1D10BQ4KMP7 808 aaPredicted RBP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 KCTD1Q719H9 257 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 ZBTB33Q86T24 672 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 TMEM35BQ8NCS4 154 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 CALR3Q96L12 384 aaKnown RBP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 PIGSQ96S52 555 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 MMTAG2Q9BU76 263 aaKnown RBP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 MXD3Q9BW11 206 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 CDV3Q9UKY7 258 aaKnown RBP11.37□□□□□ -0.59
CLIP1-209ENST00000537178 NFU1Q9UMS0 254 aa11.37□□□□□ -0.59
CLIP1-209ENST00000537178 FAM95CA0A1B0GW59 222 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 STAT2P52630 851 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 C16orf87Q6PH81 154 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 C1orf228Q6PIY5 440 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 ARHGEF25Q86VW2 580 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 ABCB6Q9NP58 842 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 KLHL8Q9P2G9 620 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-209ENST00000537178 SUGT1Q9Y2Z0 365 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 RASA4BC9J798 803 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 MEIS1O00470 390 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 RASA4O43374 803 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 PHKG2P15735 406 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 KLHL38Q2WGJ6 581 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 MSTO1Q9BUK6 570 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 CTIFO43310 598 aaKnown RBP11.36□□□□□ -0.59
CLIP1-209ENST00000537178 PRPF3O43395 683 aaKnown RBP11.36□□□□□ -0.59
CLIP1-209ENST00000537178 FAM160B2Q86V87 743 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 DDX17Q92841 729 aaKnown RBP11.36□□□□□ -0.59
CLIP1-209ENST00000537178 GREM2Q9H772 168 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 ADAM22Q9P0K1 906 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 DBNLQ9UJU6 430 aaKnown RBP11.36□□□□□ -0.59
CLIP1-209ENST00000537178 CREB3O43889 395 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 PLCG1P19174 1290 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 AARSP49588 968 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLIP1-209ENST00000537178 NEK2P51955 445 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 HDAC4P56524 1084 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 OSTNP61366 133 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 PPP6R3Q5H9R7 873 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-209ENST00000537178 SYDE2Q5VT97 1194 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 RWDD4Q6NW29 188 aaKnown RBP11.36□□□□□ -0.59
CLIP1-209ENST00000537178 MMS22LQ6ZRQ5 1243 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 ARHGAP27Q6ZUM4 889 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 PATL1Q86TB9 770 aaKnown RBP11.36□□□□□ -0.59
CLIP1-209ENST00000537178 TRPV6Q9H1D0 765 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 USP21Q9UK80 565 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 INPP5FQ9Y2H2 1132 aa11.36□□□□□ -0.59
CLIP1-209ENST00000537178 ADAMTS7Q9UKP4 1686 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 PXDNLA1KZ92 1463 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 CHGBP05060 677 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms