RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SLIT1O75093 1534 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 SPAG9O60271 1321 aaKnown RBP5.67□□□□□ -1.5
CD44-235ENST00000532339 AATKQ6ZMQ8 1374 aa5.67□□□□□ -1.5
CD44-235ENST00000532339 MROH1Q8NDA8 1641 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 DISP2A7MBM2 1401 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 CAMSAP2Q08AD1 1489 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 FAM221BA6H8Z2 402 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 FAM83GA6ND36 823 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 PRAMEF25A6NGN4 478 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 PATE3B3GLJ2 98 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 CLASP2O75122 1294 aaKnown RBP5.66□□□□□ -1.5
CD44-235ENST00000532339 ATF3P18847 181 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 PTGS1P23219 599 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 HERVK_113P62684 666 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 LACTBP83111 547 aaPredicted RBP5.66□□□□□ -1.5
CD44-235ENST00000532339 NDOR1Q9UHB4 597 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 TCAF1Q9Y4C2 921 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 MAST1Q9Y2H9 1570 aa5.66□□□□□ -1.5
CD44-235ENST00000532339 SAMD9LQ8IVG5 1584 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 CCDC163A0A0D9SF12 145 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 ESYT3A0FGR9 886 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 C4BPAP04003 597 aaKnown RBP5.65□□□□□ -1.5
CD44-235ENST00000532339 SELENOPP49908 381 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 TOP3AQ13472 1001 aaPredicted RBP5.65□□□□□ -1.5
CD44-235ENST00000532339 WDR72Q3MJ13 1102 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 ZNF585AQ6P3V2 769 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 CXXC5Q7LFL8 322 aaKnown RBP5.65□□□□□ -1.5
CD44-235ENST00000532339 MKL1Q969V6 931 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 LMF1Q96S06 567 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 SRPK1Q96SB4 655 aaKnown RBP5.65□□□□□ -1.5
CD44-235ENST00000532339 SEMA4AQ9H3S1 761 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 SLC52A2Q9HAB3 445 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 SMURF1Q9HCE7 757 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 INCENPQ9NQS7 918 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 FBXO10Q9UK96 956 aa5.65□□□□□ -1.5
CD44-235ENST00000532339 ARHGAP35Q9NRY4 1499 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 ZNF623O75123 536 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 ZNF888P0CJ79 500 aaPredicted RBP5.64□□□□□ -1.51
CD44-235ENST00000532339 AOAHP28039 575 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 ZXDAP98168 799 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 CDSNQ15517 529 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 TRIM61Q5EBN2 209 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 ZMAT1Q5H9K5 638 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 KRT27Q7Z3Y8 459 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 CISD2Q8N5K1 135 aaKnown RBP5.64□□□□□ -1.51
CD44-235ENST00000532339 DNAJC5GQ8N7S2 189 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 GSTCDQ8NEC7 633 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 ZSWIM2Q8NEG5 633 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 SH3RF3Q8TEJ3 882 aaPredicted RBP5.64□□□□□ -1.51
CD44-235ENST00000532339 UBXN4Q92575 508 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 SCYL1Q96KG9 808 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 MAGEB10Q96LZ2 347 aaPredicted RBP5.64□□□□□ -1.51
CD44-235ENST00000532339 DNAJC7Q99615 494 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 GALNT8Q9NY28 637 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 SFMBT1Q9UHJ3 866 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 WASHC2CQ9Y4E1 1318 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 ASXL1Q8IXJ9 1541 aa5.64□□□□□ -1.51
CD44-235ENST00000532339 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.63□□□□□ -1.51
CD44-235ENST00000532339 KCNK3O14649 394 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 MUSKO15146 869 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 ETV4P43268 484 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 IL13RA1P78552 427 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 EZH2Q15910 746 aaKnown RBP5.63□□□□□ -1.51
CD44-235ENST00000532339 HS1BP3Q53T59 392 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 GIMAP8Q8ND71 665 aaPredicted RBP5.63□□□□□ -1.51
CD44-235ENST00000532339 WDR48Q8TAF3 677 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 Q8TCH9 128 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 THAP3Q8WTV1 239 aaPredicted RBP5.63□□□□□ -1.51
CD44-235ENST00000532339 NEIL1Q96FI4 390 aaPredicted RBP5.63□□□□□ -1.51
CD44-235ENST00000532339 WWC2-AS2Q96NR7 200 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 GNRHR2Q96P88 292 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 LRRC37BQ96QE4 947 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 CELF4Q9BZC1 486 aaKnown RBP5.63□□□□□ -1.51
CD44-235ENST00000532339 BTBD7Q9P203 1132 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 PTPN22Q9Y2R2 807 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 PARD3Q8TEW0 1356 aa5.63□□□□□ -1.51
CD44-235ENST00000532339 UBR1Q8IWV7 1749 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 RASGRP1O95267 797 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 RAC3P60763 192 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 STILQ15468 1287 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 NBPF8Q3BBV2 869 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 TCTN3Q6NUS6 607 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 SPRED1Q7Z699 444 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 TAX1BP1Q86VP1 789 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 PALM2Q8IXS6 379 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 JMYQ8N9B5 988 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 SLC7A14Q8TBB6 771 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 WNK4Q96J92 1243 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 BTBD2Q9BX70 525 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 MRPL4Q9BYD3 311 aaKnown RBP5.62□□□□□ -1.51
CD44-235ENST00000532339 ZDHHC5Q9C0B5 715 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 ZFR2Q9UPR6 939 aaKnown RBP5.62□□□□□ -1.51
CD44-235ENST00000532339 CDK11AQ9UQ88 783 aaPredicted RBP5.62□□□□□ -1.51
CD44-235ENST00000532339 COQ6Q9Y2Z9 468 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 SHANK3Q9BYB0 1731 aa5.62□□□□□ -1.51
CD44-235ENST00000532339 SCDO00767 359 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 TET3O43151 1660 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 NPTXRO95502 500 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 HMGCRP04035 888 aa5.61□□□□□ -1.51
CD44-235ENST00000532339 GLI3P10071 1580 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms