RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PEX3P56589 373 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 ERVK-9P63128 1117 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 KCTD2Q14681 263 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 XKR3Q5GH77 459 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 RRAGAQ7L523 313 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 SYCP3Q8IZU3 236 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 SLC17A8Q8NDX2 589 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 SHCBP1Q8NEM2 672 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 WDR24Q96S15 920 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 MMP19Q99542 508 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 L2HGDHQ9H9P8 463 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 LZTFL1Q9NQ48 299 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 CYP26B1Q9NR63 512 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 DYNC1I1O14576 645 aa22.69■■□□□ 1.22
VPS28-209ENST00000528142 KIF3CO14782 793 aa22.69■■□□□ 1.22
VPS28-209ENST00000528142 DGAT1O75907 488 aa22.69■■□□□ 1.22
VPS28-209ENST00000528142 FARP2O94887 1054 aaPredicted RBP22.69■■□□□ 1.22
VPS28-209ENST00000528142 CYP2C8P10632 490 aa22.69■■□□□ 1.22
VPS28-209ENST00000528142 GNG11P61952 73 aa22.69■■□□□ 1.22
VPS28-209ENST00000528142 C12orf56Q8IXR9 622 aa22.69■■□□□ 1.22
VPS28-209ENST00000528142 GTF3C2Q8WUA4 911 aaPredicted RBP22.69■■□□□ 1.22
VPS28-209ENST00000528142 KIFAP3Q92845 792 aa22.69■■□□□ 1.22
VPS28-209ENST00000528142 NTPCRQ9BSD7 190 aaKnown RBP22.69■■□□□ 1.22
VPS28-209ENST00000528142 GANQ9H2C0 597 aa22.69■■□□□ 1.22
VPS28-209ENST00000528142 PNMA3Q9UL41 463 aa22.69■■□□□ 1.22
VPS28-209ENST00000528142 SLC16A4O15374 487 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 CTIFO43310 598 aaKnown RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 NEDD9Q14511 834 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 DCAF17Q5H9S7 520 aaPredicted RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 C2orf69Q8N8R5 385 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 C17orf75Q9HAS0 396 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 XPNPEP1Q9NQW7 623 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 ZNF302Q9NR11 478 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 CGNQ9P2M7 1197 aaKnown RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 SEPT9Q9UHD8 586 aaPredicted RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 SLC45A1Q9Y2W3 748 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 GSTTP1A0A1W2PQM5 241 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 EIF3CLB5ME19 914 aaKnown RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 CETPP11597 493 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 CYLC1P35663 651 aaPredicted RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 NPTX2P47972 431 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 CYP2J2P51589 502 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 APBA1Q02410 837 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 MKRN3Q13064 507 aaKnown RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 CACNA2D4Q7Z3S7 1137 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 TMEM161BQ8NDZ6 487 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 SPIRE2Q8WWL2 714 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 BSNDQ8WZ55 320 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 SYN2Q92777 582 aaPredicted RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 EIF3CQ99613 913 aaKnown RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 IRX2Q9BZI1 471 aaPredicted RBP22.68■■□□□ 1.22
VPS28-209ENST00000528142 PLCB1Q9NQ66 1216 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 ARHGAP20Q9P2F6 1191 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 FRMD4BQ9Y2L6 1034 aa22.68■■□□□ 1.22
VPS28-209ENST00000528142 ABL1P00519 1130 aa22.67■■□□□ 1.22
VPS28-209ENST00000528142 RTP1P59025 263 aa22.67■■□□□ 1.22
VPS28-209ENST00000528142 SNRPFP62306 86 aaKnown RBP22.67■■□□□ 1.22
VPS28-209ENST00000528142 MCPH1Q8NEM0 835 aa22.67■■□□□ 1.22
VPS28-209ENST00000528142 MORC4Q8TE76 937 aa22.67■■□□□ 1.22
VPS28-209ENST00000528142 PCYT2Q99447 389 aa22.67■■□□□ 1.22
VPS28-209ENST00000528142 MPHOSPH6Q99547 160 aaKnown RBP22.67■■□□□ 1.22
VPS28-209ENST00000528142 NUCKS1Q9H1E3 243 aaKnown RBP22.67■■□□□ 1.22
VPS28-209ENST00000528142 PASKQ96RG2 1323 aa22.67■■□□□ 1.22
VPS28-209ENST00000528142 GTPBP10A4D1E9 387 aaKnown RBP22.66■■□□□ 1.22
VPS28-209ENST00000528142 PLEKP08567 350 aaPredicted RBP22.66■■□□□ 1.22
VPS28-209ENST00000528142 GTF2A2P52657 109 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 POLR2FP61218 127 aaKnown RBP22.66■■□□□ 1.22
VPS28-209ENST00000528142 DMP1Q13316 513 aaPredicted RBP22.66■■□□□ 1.22
VPS28-209ENST00000528142 TCERG1LQ5VWI1 586 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 EEPD1Q7L9B9 569 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 HVCN1Q96D96 273 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 PORCNQ9H237 461 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 NLRC4Q9NPP4 1024 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 DOCK5Q9H7D0 1870 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 MYH11P35749 1972 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 TISP43B9A030 160 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 BTBD19C9JJ37 291 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 PDHXO00330 501 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 OATP04181 439 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 SLC9A1P19634 815 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 PON1P27169 355 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 SMTNP53814 917 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 SOX10P56693 466 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 KRT83P78385 493 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 METTL7BQ6UX53 244 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 ZNF662Q6ZS27 426 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 EFCC1Q9HA90 598 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 ATP6V0A4Q9HBG4 840 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 GPBP1L1Q9HC44 474 aaPredicted RBP22.66■■□□□ 1.22
VPS28-209ENST00000528142 DDX41Q9UJV9 622 aaKnown RBP22.66■■□□□ 1.22
VPS28-209ENST00000528142 TBX20Q9UMR3 447 aa22.66■■□□□ 1.22
VPS28-209ENST00000528142 LRRC37A2A6NM11 1700 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 EXOC3O60645 756 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 CASQ1P31415 396 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 PPP2R5AQ15172 486 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 EXOC3L4Q17RC7 722 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 LY6KQ17RY6 165 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 ARHGAP29Q52LW3 1261 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 GPRC5AQ8NFJ5 357 aa22.65■■□□□ 1.22
VPS28-209ENST00000528142 BRI3BPQ8WY22 251 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms