RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 PEX11GQ96HA9 241 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 TMOD3Q9NYL9 352 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 APEX2Q9UBZ4 518 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 PRKAG3Q9UGI9 489 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 NUDT5Q9UKK9 219 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 NCAPD2Q15021 1401 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 UBR3Q6ZT12 1888 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 ATRXP46100 2492 aa6.71□□□□□ -1.33
NUP54-218ENST00000515460 NSD3Q9BZ95 1437 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 NPHS1O60500 1241 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 MRE11P49959 708 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 ARID5AQ03989 594 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 FXNQ16595 210 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 L1TD1Q5T7N2 865 aaKnown RBP6.71□□□□□ -1.34
NUP54-218ENST00000515460 FBXO46Q6PJ61 603 aaPredicted RBP6.71□□□□□ -1.34
NUP54-218ENST00000515460 TRIM59Q8IWR1 403 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 CARFQ8N187 725 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 ZNF513Q8N8E2 541 aaPredicted RBP6.71□□□□□ -1.34
NUP54-218ENST00000515460 TSPAN17Q96FV3 270 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 ZNF830Q96NB3 372 aaPredicted RBP6.71□□□□□ -1.34
NUP54-218ENST00000515460 NOX5Q96PH1 765 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 MTA3Q9BTC8 594 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 SAGE1Q9NXZ1 904 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 SIT1Q9Y3P8 196 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 R3HCC1Q9Y3T6 440 aaKnown RBP6.71□□□□□ -1.34
NUP54-218ENST00000515460 TAF1LQ8IZX4 1826 aa6.71□□□□□ -1.34
NUP54-218ENST00000515460 SH3D21A4FU49 640 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 ERVV-2B6SEH9 535 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 FUCA1P04066 466 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 GYS1P13807 737 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 RBM25P49756 843 aaKnown RBP6.7□□□□□ -1.34
NUP54-218ENST00000515460 TERF1P54274 439 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 DLX2Q07687 328 aaPredicted RBP6.7□□□□□ -1.34
NUP54-218ENST00000515460 SCRN1Q12765 414 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 KCTD2Q14681 263 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 SPATS1Q496A3 300 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 C6orf15Q6UXA7 325 aaPredicted RBP6.7□□□□□ -1.34
NUP54-218ENST00000515460 FAM178BQ8IXR5 827 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 NETO2Q8NC67 525 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 YY1AP1Q9H869 796 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 GPRC5CQ9NQ84 441 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 HACL1Q9UJ83 578 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 HDAC5Q9UQL6 1122 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 SCN4AP35499 1836 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 C4BP0C0L5 1744 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 DOT1LQ8TEK3 1739 aa6.7□□□□□ -1.34
NUP54-218ENST00000515460 TRPM7Q96QT4 1865 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 TRANK1O15050 2925 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 C7orf72A4D263 438 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 RPS6KA4O75676 772 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 DDAH1O94760 285 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 CELF2O95319 508 aaKnown RBP6.69□□□□□ -1.34
NUP54-218ENST00000515460 NTRK1P04629 796 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 CNR2P34972 360 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 KIF23Q02241 960 aaPredicted RBP6.69□□□□□ -1.34
NUP54-218ENST00000515460 DMTNQ08495 405 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 NOGQ13253 232 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 SMAD4Q13485 552 aaKnown RBP6.69□□□□□ -1.34
NUP54-218ENST00000515460 SLC9A5Q14940 896 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 SV2CQ496J9 727 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 ZFYVE27Q5T4F4 411 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 GTF2IRD2BQ6EKJ0 949 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 GTF2IRD2Q86UP8 949 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 COPS5Q92905 334 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 ZBTB8AQ96BR9 441 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 DDX11Q96FC9 970 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 MMP19Q99542 508 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 TINF2Q9BSI4 451 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 CYP26B1Q9NR63 512 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 IGSF5Q9NSI5 407 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 CLEC1BQ9P126 229 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 LRP2BPQ9P2M1 347 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 KCNG1Q9UIX4 513 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 DUSP10Q9Y6W6 482 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 RNF123Q5XPI4 1314 aa6.69□□□□□ -1.34
NUP54-218ENST00000515460 SETXQ7Z333 2677 aaKnown RBP6.69□□□□□ -1.34
NUP54-218ENST00000515460 ZDBF2Q9HCK1 2354 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 BDP1A6H8Y1 2624 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 C4AP0C0L4 1744 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 RGPD2P0DJD1 1756 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 LETM1O95202 739 aaPredicted RBP6.68□□□□□ -1.34
NUP54-218ENST00000515460 FGRP09769 529 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 SARSP49591 514 aaKnown RBP6.68□□□□□ -1.34
NUP54-218ENST00000515460 GJA9P57773 515 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 CACNB2Q08289 660 aaPredicted RBP6.68□□□□□ -1.34
NUP54-218ENST00000515460 EFEMP1Q12805 493 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 PLEKHO1Q53GL0 409 aaPredicted RBP6.68□□□□□ -1.34
NUP54-218ENST00000515460 WWC2Q6AWC2 1192 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 IQCEQ6IPM2 695 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 DPF3Q92784 378 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 ZNF428Q96B54 188 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 DNAJC2Q99543 621 aaKnown RBP6.68□□□□□ -1.34
NUP54-218ENST00000515460 GTPBP4Q9BZE4 634 aaKnown RBP6.68□□□□□ -1.34
NUP54-218ENST00000515460 NKX2-4Q9H2Z4 354 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 PANK3Q9H999 370 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.68□□□□□ -1.34
NUP54-218ENST00000515460 RPTORQ8N122 1335 aa6.68□□□□□ -1.34
NUP54-218ENST00000515460 DICER1Q9UPY3 1922 aaKnown RBP6.68□□□□□ -1.34
NUP54-218ENST00000515460 K7ESM1 405 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 SUSD5O60279 629 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms