RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 ATP1A1P05023 1023 aaKnown RBP14.2□□□□□ -0.14
TCOF1-214ENST00000515035 OR6B2Q6IFH4 312 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 SPATA4Q8NEY3 305 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 RAPGEF5Q92565 580 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 USP6NLQ92738 828 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.2□□□□□ -0.141e-8■□□□□ 9.7
TCOF1-214ENST00000515035 GJB4Q9NTQ9 266 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 NCAPD2Q15021 1401 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 TEX33O43247 280 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 ADD2P35612 726 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 DDIT3P35638 169 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 SUPT20HL1Q3ZLR7 823 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 RASSF3Q86WH2 238 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 ATP6V0A1Q93050 837 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 VPS39Q96JC1 886 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 VIPAS39Q9H9C1 493 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 L3MBTL1Q9Y468 752 aa14.2□□□□□ -0.14
TCOF1-214ENST00000515035 MED7O43513 233 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 HDAC4P56524 1084 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 YWHAHQ04917 246 aaPredicted RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 MKRN3Q13064 507 aaKnown RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 FLOT2Q14254 428 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 NCLNQ969V3 563 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 PIGSQ96S52 555 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 KLC2Q9H0B6 622 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 NXF1Q9UBU9 619 aaKnown RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 TTC26A0AVF1 554 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 BRD2P25440 801 aaKnown RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 ZNF211Q13398 564 aaPredicted RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 ARHGEF6Q15052 776 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 DALRD3Q5D0E6 543 aaKnown RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 RARS2Q5T160 578 aaKnown RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 GADL1Q6ZQY3 521 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 SPATA21Q7Z572 469 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 SH2D3CQ8N5H7 860 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 ZC3H15Q8WU90 426 aaKnown RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 ANKRD7Q92527 254 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 SEPT9Q9UHD8 586 aaPredicted RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 DNAJC12Q9UKB3 198 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 KPNA7A9QM74 516 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 CD58P19256 250 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 KCNA4P22459 653 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 UBXN2AP68543 259 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 ABCB5Q2M3G0 1257 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 SLC7A3Q8WY07 619 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 CNOT8Q9UFF9 292 aaKnown RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 TRIM33Q9UPN9 1127 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 KRT4P19013 534 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 TFAMQ00059 246 aaKnown RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 PTCH1Q13635 1447 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 RTKN2Q8IZC4 609 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 THAP11Q96EK4 314 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 PUS7LQ9H0K6 701 aaKnown RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 ADA2Q9NZK5 511 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 GGT7Q9UJ14 662 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 TTC7AQ9ULT0 858 aaPredicted RBP14.19□□□□□ -0.14
TCOF1-214ENST00000515035 ARL2BPQ9Y2Y0 163 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 TNS3Q68CZ2 1445 aa14.19□□□□□ -0.14
TCOF1-214ENST00000515035 SLC4A1P02730 911 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 ZSCAN20P17040 1043 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 CHRNA3P32297 505 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 MRPS15P82914 257 aaKnown RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 CDC37Q16543 378 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 RSRC2Q7L4I2 434 aaKnown RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 RBM41Q96IZ5 413 aaKnown RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 SLITRK6Q9H5Y7 841 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 ZWILCHQ9H900 591 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 SATB2Q9UPW6 733 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 SUPT3HO75486 399 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 PMS1P54277 932 aaKnown RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 DHX40Q8IX18 779 aaKnown RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 CCDC195A0A1B0GUA6 201 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 FAM187AA6NFU0 413 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 hCG_1984214I3L0E3 225 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 TAC1P20366 129 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 PGM1P36871 562 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 TRPC1P48995 793 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 ZNF713Q8N859 430 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 ZNF579Q8NAF0 562 aaKnown RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 EXT2Q93063 718 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 CCPG1Q9ULG6 757 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 GOLGA8MH3BSY2 632 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 GPC5P78333 572 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 FOXD4Q12950 439 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 UNC13DQ70J99 1090 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 CDC26Q8NHZ8 85 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 VPS11Q9H270 941 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 KCNF1Q9H3M0 494 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 ZNF229Q9UJW7 825 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 FNDC3AQ9Y2H6 1198 aaKnown RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 PRKAB2O43741 272 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 KCNQ4P56696 695 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 GRAPQ13588 217 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 TOB2Q14106 344 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 GRAPLQ8TC17 118 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-214ENST00000515035 PI4K2BQ8TCG2 481 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 DTX3LQ8TDB6 740 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 COA7Q96BR5 231 aa14.18□□□□□ -0.14
TCOF1-214ENST00000515035 CCDC22O60826 627 aa14.17□□□□□ -0.14
TCOF1-214ENST00000515035 APOA1P02647 267 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms