RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MAPK13O15264 365 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 DHX15O43143 795 aaKnown RBP16.19■□□□□ 0.18
NUP54-217ENST00000514987 ZBED4O75132 1171 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 CXCR5P32302 372 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 JAK3P52333 1124 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 MAPK7Q13164 816 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 NNTQ13423 1086 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 ENOX2Q16206 610 aaKnown RBP16.19■□□□□ 0.18
NUP54-217ENST00000514987 NBPF9Q3BBW0 867 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 GPIHBP1Q8IV16 184 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 CDAN1Q8IWY9 1227 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 BANK1Q8NDB2 785 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 RBM46Q8TBY0 533 aaKnown RBP16.19■□□□□ 0.18
NUP54-217ENST00000514987 ST6GALNAC4Q9H4F1 302 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 TCEAL9Q9UHQ7 104 aa16.19■□□□□ 0.18
NUP54-217ENST00000514987 ZHX1Q9UKY1 873 aaPredicted RBP16.19■□□□□ 0.18
NUP54-217ENST00000514987 ZBTB39O15060 712 aa16.18■□□□□ 0.18
NUP54-217ENST00000514987 EXOC3O60645 756 aa16.18■□□□□ 0.18
NUP54-217ENST00000514987 SFNP31947 248 aa16.18■□□□□ 0.18
NUP54-217ENST00000514987 CYP2J2P51589 502 aa16.18■□□□□ 0.18
NUP54-217ENST00000514987 TNNC1P63316 161 aa16.18■□□□□ 0.18
NUP54-217ENST00000514987 MYL7Q01449 175 aa16.18■□□□□ 0.18
NUP54-217ENST00000514987 BFSP1Q12934 665 aa16.18■□□□□ 0.18
NUP54-217ENST00000514987 MTMR1Q13613 665 aa16.18■□□□□ 0.18
NUP54-217ENST00000514987 INTS8Q75QN2 995 aaKnown RBP16.18■□□□□ 0.18
NUP54-217ENST00000514987 RDM1Q8NG50 284 aa16.18■□□□□ 0.18
NUP54-217ENST00000514987 SYTL5Q8TDW5 730 aaPredicted RBP16.18■□□□□ 0.18
NUP54-217ENST00000514987 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.18■□□□□ 0.18
NUP54-217ENST00000514987 CCDC43Q96MW1 224 aaKnown RBP16.18■□□□□ 0.18
NUP54-217ENST00000514987 INTS2Q9H0H0 1204 aaKnown RBP16.18■□□□□ 0.18
NUP54-217ENST00000514987 F8VZ95 297 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 K7ENM7 598 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 NFIBO00712 420 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 FTCDO95954 541 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 ALAS1P13196 640 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 PLS3P13797 630 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 POLD1P28340 1107 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 NOP2P46087 812 aaKnown RBP16.17■□□□□ 0.18
NUP54-217ENST00000514987 BAG6P46379 1132 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 SF3B2Q13435 895 aaKnown RBP16.17■□□□□ 0.18
NUP54-217ENST00000514987 C4orf19Q8IY42 314 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 DAW1Q8N136 415 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 EIF1ADQ8N9N8 165 aaKnown RBP16.17■□□□□ 0.18
NUP54-217ENST00000514987 CAVIN3Q969G5 261 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 INPP4AQ96PE3 977 aaPredicted RBP16.17■□□□□ 0.18
NUP54-217ENST00000514987 PACSIN1Q9BY11 444 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 POLD4Q9HCU8 107 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 RBM12Q9NTZ6 932 aaKnown RBP16.17■□□□□ 0.18
NUP54-217ENST00000514987 ANKEF1Q9NU02 776 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 CALCOCO1Q9P1Z2 691 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 COL20A1Q9P218 1284 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.17■□□□□ 0.18
NUP54-217ENST00000514987 APEX2Q9UBZ4 518 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 DNAJC12Q9UKB3 198 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 PPP1R9AQ9ULJ8 1098 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 PMM2O15305 246 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 MATR3P43243 847 aaKnown RBP eCLIP16.17■□□□□ 0.181e-9■■■■□ 19.8
NUP54-217ENST00000514987 RARRES1P49788 294 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 KRT76Q01546 638 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 ALS2CLQ60I27 953 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 SLC30A10Q6XR72 485 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 LRRC57Q8N9N7 239 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 SLC30A5Q8TAD4 765 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 HVCN1Q96D96 273 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 TEPSINQ96N21 525 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 PSMB7Q99436 277 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 MAF1Q9H063 256 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 TAOK3Q9H2K8 898 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 BCAS3Q9H6U6 928 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 FAN1Q9Y2M0 1017 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 ZHX2Q9Y6X8 837 aa16.17■□□□□ 0.18
NUP54-217ENST00000514987 DDX39AO00148 427 aaKnown RBP16.16■□□□□ 0.18
NUP54-217ENST00000514987 DDX3XO00571 662 aaKnown RBP eCLIP16.16■□□□□ 0.183e-11■■□□□ 12
NUP54-217ENST00000514987 EVI5O60447 810 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 ZMYND10O75800 440 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 KIF4AO95239 1232 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 PSMC5P62195 406 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 PAK2Q13177 524 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 ITGB3BPQ13352 177 aaPredicted RBP16.16■□□□□ 0.18
NUP54-217ENST00000514987 COG2Q14746 738 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 DCAF15Q66K64 600 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 SLFN11Q7Z7L1 901 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 TPCN2Q8NHX9 752 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 ACTRT1Q8TDG2 376 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 RAVER2Q9HCJ3 691 aaKnown RBP16.16■□□□□ 0.18
NUP54-217ENST00000514987 SUCLA2Q9P2R7 463 aaPredicted RBP16.16■□□□□ 0.18
NUP54-217ENST00000514987 DMGDHQ9UI17 866 aaKnown RBP16.16■□□□□ 0.18
NUP54-217ENST00000514987 EXOC7Q9UPT5 735 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 SAMM50Q9Y512 469 aa16.16■□□□□ 0.18
NUP54-217ENST00000514987 GOLGA6BA6NDN3 693 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 WDR64B1ANS9 1081 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 MAFGO15525 162 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 OPA1O60313 960 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 DKC1O60832 514 aaKnown RBP eCLIP16.15■□□□□ 0.18
NUP54-217ENST00000514987 TMEM253P0C7T8 217 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 YWHABP31946 246 aaKnown RBP16.15■□□□□ 0.18
NUP54-217ENST00000514987 MCCD1P59942 119 aaPredicted RBP16.15■□□□□ 0.18
NUP54-217ENST00000514987 MRPS9P82933 396 aaKnown RBP16.15■□□□□ 0.18
NUP54-217ENST00000514987 GTF2BQ00403 316 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 DRAP1Q14919 205 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms