RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ATP2A2P16615 1042 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 EDNRBP24530 442 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 ZKSCAN8Q15776 578 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 LRRC8DQ7L1W4 858 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 RPUSD2Q8IZ73 545 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 TMEM87AQ8NBN3 555 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 SNX29Q8TEQ0 813 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 LXNQ9BS40 222 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 WNT8AQ9H1J5 351 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 NKX2-4Q9H2Z4 354 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 KIAA1024Q9UPX6 916 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 CDY2AQ9Y6F7 541 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 K7ELQ4 463 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 KIF1CO43896 1103 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 PSAPP07602 524 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 CKBP12277 381 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 DNAJB2P25686 324 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 AP3B2Q13367 1082 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 FAM160B1Q5W0V3 765 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 FBXO18Q8NFZ0 1043 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 DOCK5Q9H7D0 1870 aa8.73□□□□□ -1.01
LIMCH1-219ENST00000514096 WDR64B1ANS9 1081 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 COL6A1P12109 1028 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 PPP2R2DQ66LE6 453 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 TWF2Q6IBS0 349 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 CAVIN1Q6NZI2 390 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 DYMQ7RTS9 669 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 SESTD1Q86VW0 696 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 ANKLE1Q8NAG6 615 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 PHF20Q9BVI0 1012 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 KATNAL1Q9BW62 490 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 ST7Q9NRC1 585 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 SH2B1Q9NRF2 756 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 CHMP5Q9NZZ3 219 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 LRWD1Q9UFC0 647 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 LRFN2Q9ULH4 789 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 HES2Q9Y543 173 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 UBIAD1Q9Y5Z9 338 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 ZNF862O60290 1169 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 TIMP1P01033 207 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 TPM1P09493 284 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 ABCD1P33897 745 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 NOP2P46087 812 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 BFSP2Q13515 415 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 STK38Q15208 465 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 LPPQ93052 612 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 GPRASP2Q96D09 838 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 NOC4LQ9BVI4 516 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 CACNG4Q9UBN1 327 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 GTF2IRD1Q9UHL9 959 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 ELP1O95163 1332 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 RLFQ13129 1914 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 A0A087WZ62 844 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 LCHNA4D1U4 455 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 E9PMD0 336 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 TGFB3P10600 412 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 SYT1P21579 422 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 RDXP35241 583 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 GRIN1Q05586 938 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 SEZ6Q53EL9 994 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 NOSTRINQ8IVI9 506 aa8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 MSL3Q8N5Y2 521 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 FDXACB1Q9BRP7 624 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.72□□□□□ -1.01
LIMCH1-219ENST00000514096 C2CD2LO14523 706 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 RPS6KA5O75582 802 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 ME1P48163 572 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 KRT76Q01546 638 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 CATSPER4Q7RTX7 472 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 RSPH3Q86UC2 560 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 RNF149Q8NC42 400 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 KCNB2Q92953 911 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 PCYT2Q99447 389 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 BHMT2Q9H2M3 363 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 KLK14Q9P0G3 267 aa8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 PIN4Q9Y237 131 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 SPTBN5Q9NRC6 3674 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-219ENST00000514096 DYTNA2CJ06 578 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 NKRFO15226 690 aaKnown RBP eCLIP8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 IQCF3P0C7M6 154 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 ISM2Q6H9L7 571 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 MFSD5Q6N075 450 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 C16orf59Q7L2K0 433 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 APBB1IPQ7Z5R6 666 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 EEF2KMTQ96G04 330 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 MAP3K14Q99558 947 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 TRIM6Q9C030 488 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 AGO3Q9H9G7 860 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 PRDM6Q9NQX0 595 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 DDX19AQ9NUU7 478 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 CHD9Q3L8U1 2897 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 LOC285556D6RIA3 1793 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 NPHP3-ACAD11A0A0J9YXS1 232 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 GNAT1P11488 350 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 UBA7P41226 1012 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 BCAR1P56945 870 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 KCNV1Q6PIU1 500 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 HASPINQ8TF76 798 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 SLC7A3Q8WY07 619 aa8.71□□□□□ -1.02
LIMCH1-219ENST00000514096 ERCC4Q92889 916 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms