RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 CCNT1O60563 726 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 F13A1P00488 732 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 LINC00271P0C7V0 271 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 MTERF2Q49AM1 385 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 XKR3Q5GH77 459 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 TCEAL5Q5H9L2 206 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 FAM228AQ86W67 206 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 CRIPAKQ8N1N5 446 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 NAP1L4Q99733 375 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 LMAN2LQ9H0V9 348 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 BRMS1Q9HCU9 246 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 MUC3AQ02505 3323 aa20.19■□□□□ 0.82
SQSTM1-209ENST00000504627 NCOR1O75376 2440 aa20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 RALGAPA2Q2PPJ7 1873 aa20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 GRM6O15303 877 aa20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 SLC37A4O43826 429 aa20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 CSPG5O95196 566 aa20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 GCFC2P16383 781 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 SPOUT1Q5T280 376 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 PPP4R3AQ6IN85 833 aa20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 LINC01465Q8N7H1 131 aa20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 OXER1Q8TDS5 423 aa20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 ZNF668Q96K58 619 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 ALG13Q9NP73 1137 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 ATP6V1DQ9Y5K8 247 aa20.18■□□□□ 0.82
SQSTM1-209ENST00000504627 DDX11L8A8MPP1 907 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 ZSCAN20P17040 1043 aaPredicted RBP20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 GATMP50440 423 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 DNM2P50570 870 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 FOSBP53539 338 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 B3GNT9Q6UX72 402 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 NLRP7Q8WX94 980 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 P2RX5Q93086 422 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 FAM20AQ96MK3 541 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 ADAMTS10Q9H324 1103 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 BRWD1Q9NSI6 2320 aa20.17■□□□□ 0.82
SQSTM1-209ENST00000504627 TBKBP1A7MCY6 615 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 C9IYK1 514 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 EIF4BP23588 611 aaKnown RBP20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 KRT2P35908 639 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 GPC3P51654 580 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 PSMC5P62195 406 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 LEXMQ3ZCV2 418 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 NAALADL2Q58DX5 795 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 CLEC17AQ6ZS10 378 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 SH2D3AQ9BRG2 576 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 NIFKQ9BYG3 293 aaKnown RBP20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 ZSCAN16Q9H4T2 348 aaPredicted RBP20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 ATP6V0A4Q9HBG4 840 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 PLAGL2Q9UPG8 496 aa20.16■□□□□ 0.82
SQSTM1-209ENST00000504627 TMEM150BA6NC51 233 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 NCK2O43639 380 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 DKC1O60832 514 aaKnown RBP eCLIP20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 MMP1P03956 469 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 CDC42EP1Q00587 391 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 RESTQ13127 1097 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 TARBP2Q15633 366 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 FAM102BQ5T8I3 360 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 PABPC5Q96DU9 382 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 GBP4Q96PP9 640 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 KCNMB3Q9NPA1 279 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 AAASQ9NRG9 546 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 TMEM161AQ9NX61 479 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 CLDND1Q9NY35 253 aa20.15■□□□□ 0.82
SQSTM1-209ENST00000504627 H3BQ06 376 aaPredicted RBP20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 EML1O00423 815 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 TBX3O15119 743 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 BAG4O95429 457 aaKnown RBP20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 DARSP14868 501 aaKnown RBP20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 QARSP47897 775 aaKnown RBP20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 GUCY1B3Q02153 619 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 NR5A1Q13285 461 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 PPP2R5CQ13362 524 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 SAFBQ15424 915 aaKnown RBP eCLIP20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 KLHL23Q8NBE8 558 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 PPP2R3CQ969Q6 453 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 GCOM2Q9BZD3 368 aaPredicted RBP20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 ELAC1Q9H777 363 aaKnown RBP20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 PCDHB12Q9Y5F1 795 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 BDP1A6H8Y1 2624 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 TCHHQ07283 1943 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 WDR81Q562E7 1941 aa20.14■□□□□ 0.81
SQSTM1-209ENST00000504627 MYO7AQ13402 2215 aa20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 ITGB1P05556 798 aa20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 FGFR1P11362 822 aa20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 DSC3Q14574 896 aa20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 EARS2Q5JPH6 523 aaKnown RBP20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 FOXD4L5Q5VV16 416 aaPredicted RBP20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 PTCRAQ6ISU1 281 aaPredicted RBP20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 BRAPQ7Z569 592 aa20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 POTEDQ86YR6 584 aa20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 SLFN12Q8IYM2 578 aa20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 FOXD4L4Q8WXT5 416 aaPredicted RBP20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 JPH2Q9BR39 696 aaPredicted RBP20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 IGFLR1Q9H665 355 aa20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 VAV3Q9UKW4 847 aa20.13■□□□□ 0.81
SQSTM1-209ENST00000504627 HOXA2O43364 376 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 STBD1O95210 358 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms