RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 AXDND1Q5T1B0 1012 aaPredicted RBP11.19□□□□□ -0.62
NUP54-203ENST00000504173 PLA2G4FQ68DD2 849 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 OTUD6AQ7L8S5 288 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 LMBR1Q8WVP7 490 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 CCDC43Q96MW1 224 aaKnown RBP11.19□□□□□ -0.62
NUP54-203ENST00000504173 NACC1Q96RE7 527 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 CCSER1Q9C0I3 900 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 NT5C3AQ9H0P0 336 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 DDX19AQ9NUU7 478 aaKnown RBP11.19□□□□□ -0.62
NUP54-203ENST00000504173 SETD4Q9NVD3 440 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 CCDC39Q9UFE4 941 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 KIAA1024Q9UPX6 916 aa11.19□□□□□ -0.62
NUP54-203ENST00000504173 COL1A2P08123 1366 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.18□□□□□ -0.62
NUP54-203ENST00000504173 TMEM150BA6NC51 233 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 EPOPA6NHQ4 379 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 RRN3P2A6NIE6 340 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 RFXAPO00287 272 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 TLR3O15455 904 aaKnown RBP11.18□□□□□ -0.62
NUP54-203ENST00000504173 STBD1O95210 358 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 FGBP02675 491 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 MYOGP15173 224 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 CDK7P50613 346 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 RABGGTBP53611 331 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 GRB10Q13322 594 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 KARSQ15046 597 aaKnown RBP11.18□□□□□ -0.62
NUP54-203ENST00000504173 ECM1Q16610 540 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 PTGISQ16647 500 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 TPRNQ4KMQ1 711 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 XKR9Q5GH70 373 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 HYIQ5T013 277 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 ADALQ6DHV7 355 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 GDF6Q6KF10 455 aaPredicted RBP11.18□□□□□ -0.62
NUP54-203ENST00000504173 SHC4Q6S5L8 630 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 USP49Q70CQ1 688 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 ANO5Q75V66 913 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 PIGOQ8TEQ8 1089 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 TRAPPC12Q8WVT3 735 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 CEP170P1Q96L14 293 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 PNMA5Q96PV4 448 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 PLIN2Q99541 437 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 SH2D3AQ9BRG2 576 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 NIFKQ9BYG3 293 aaKnown RBP11.18□□□□□ -0.62
NUP54-203ENST00000504173 ANKEF1Q9NU02 776 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 TRMT13Q9NUP7 481 aaKnown RBP11.18□□□□□ -0.62
NUP54-203ENST00000504173 FAM13BQ9NYF5 915 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 NOD1Q9Y239 953 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 KAT6AQ92794 2004 aa11.18□□□□□ -0.62
NUP54-203ENST00000504173 CHD6Q8TD26 2715 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 A0A087WWV3 80 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 GOLGA6L4A6NEF3 574 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 ZBTB39O15060 712 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 B4GALT4O60513 344 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 XRCC6P12956 609 aaKnown RBP eCLIP11.17□□□□□ -0.62
NUP54-203ENST00000504173 PLCG1P19174 1290 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 HOXC8P31273 242 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 NPEPPSP55786 919 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 ZNF200P98182 395 aaPredicted RBP11.17□□□□□ -0.62
NUP54-203ENST00000504173 TCF15Q12870 199 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 TMEM119Q4V9L6 283 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 RESP18Q5W5W9 173 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 FAM126BQ8IXS8 530 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 TRPV6Q9H1D0 765 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 CYP26B1Q9NR63 512 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 LMCD1Q9NZU5 365 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 TUBE1Q9UJT0 475 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 DNM3Q9UQ16 869 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 PPME1Q9Y570 386 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 ZFHX4Q86UP3 3567 aa11.17□□□□□ -0.62
NUP54-203ENST00000504173 FAM186AA6NE01 2351 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 ARHGEF35A5YM69 484 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 ZBTB42B2RXF5 422 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 E9PMD0 336 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 TREHO43280 583 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 EYA4O95677 639 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 CYP2C9P11712 490 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 CMA1P23946 247 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 KLRC1P26715 233 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 RARRES1P49788 294 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 TBC1D8BQ0IIM8 1120 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 HIC1Q14526 733 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 TARBP2Q15633 366 aaKnown RBP11.16□□□□□ -0.62
NUP54-203ENST00000504173 RRAGBQ5VZM2 374 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 MTHFD1LQ6UB35 978 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 CCDC73Q6ZRK6 1079 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 KCNK18Q7Z418 384 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 BMP8AQ7Z5Y6 402 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 KCTD17Q8N5Z5 321 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 PDILTQ8N807 584 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 FSIP1Q8NA03 581 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.16□□□□□ -0.62
NUP54-203ENST00000504173 GBP4Q96PP9 640 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 BHMT2Q9H2M3 363 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 UBE2ZQ9H832 354 aaPredicted RBP11.16□□□□□ -0.62
NUP54-203ENST00000504173 DBR1Q9UK59 544 aaKnown RBP11.16□□□□□ -0.62
NUP54-203ENST00000504173 SLC4A7Q9Y6M7 1214 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 GVINP1Q7Z2Y8 2422 aa11.16□□□□□ -0.62
NUP54-203ENST00000504173 NCOR2Q9Y618 2525 aa11.15□□□□□ -0.62
NUP54-203ENST00000504173 TPRP12270 2363 aaKnown RBP11.15□□□□□ -0.62
NUP54-203ENST00000504173 A0A1B0GVL5 298 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms