RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 FMNL3Q8IVF7 1028 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 VSTM4Q8IW00 320 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 NELFCDQ8IXH7 590 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 ZNF710Q8N1W2 664 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 CCDC51Q96ER9 411 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 CAPNS2Q96L46 248 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 CNOT6LQ96LI5 555 aaKnown RBP9.29□□□□□ -0.92
SF3A1-210ENST00000498259 FGD4Q96M96 766 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 DUSP9Q99956 384 aaKnown RBP9.29□□□□□ -0.92
SF3A1-210ENST00000498259 NAA15Q9BXJ9 866 aaKnown RBP9.29□□□□□ -0.92
SF3A1-210ENST00000498259 AP5M1Q9H0R1 490 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 KCTD10Q9H3F6 313 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 SPC25Q9HBM1 224 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 ARMCX3Q9UH62 379 aaPredicted RBP9.29□□□□□ -0.92
SF3A1-210ENST00000498259 ZHX1Q9UKY1 873 aaPredicted RBP9.29□□□□□ -0.92
SF3A1-210ENST00000498259 TRPC6Q9Y210 931 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 COL1A2P08123 1366 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 TRIM49BA6NDI0 452 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 SFI1A8K8P3 1242 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 ESPNB1AK53 854 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 ZBTB39O15060 712 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 AP5Z1O43299 807 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 ZNF862O60290 1169 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 ZEB2O60315 1214 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 STX10O60499 249 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 MAFO75444 373 aaPredicted RBP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 SNAI1O95863 264 aaPredicted RBP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 NR3C1P04150 777 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 KRT13P13646 458 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 PSMC2P35998 433 aaKnown RBP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 NAMPTP43490 491 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 NCKAP1LP55160 1127 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 PEX3P56589 373 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 GTF2BQ00403 316 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 EMC2Q15006 297 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 HSDL1Q3SXM5 330 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 VWA3BQ502W6 1294 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 ZCWPW2Q504Y3 356 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 HSP90AA4PQ58FG1 418 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 PLA2G4FQ68DD2 849 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 SLFN12LQ6IEE8 588 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 CYP4F22Q6NT55 531 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 TRMT1LQ7Z2T5 733 aaKnown RBP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 HAUS6Q7Z4H7 955 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 SLC9A9Q8IVB4 645 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 OR6J1Q8NGC5 347 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 DEPTORQ8TB45 409 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 PSPC1Q8WXF1 523 aaKnown RBP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 KCNN1Q92952 543 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 HPS3Q969F9 1004 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 PCMTD1Q96MG8 357 aaPredicted RBP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 KATNAL1Q9BW62 490 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 CFHR5Q9BXR6 569 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 NUCKS1Q9H1E3 243 aaKnown RBP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 C2orf40Q9H1Z8 148 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 VPS16Q9H269 839 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 DHX33Q9H6R0 707 aaKnown RBP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 KIAA1586Q9HCI6 787 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 ZNHIT6Q9NWK9 470 aaKnown RBP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 ZKSCAN5Q9Y2L8 839 aa9.28□□□□□ -0.92
SF3A1-210ENST00000498259 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.28□□□□□ -0.92
SF3A1-210ENST00000498259 ZNF236Q9UL36 1845 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 RRN3P2A6NIE6 340 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 RSPH10B2B2RC85 870 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 AKR1B15C9JRZ8 316 aaPredicted RBP9.27□□□□□ -0.93
SF3A1-210ENST00000498259 MAPK13O15264 365 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 PRPF6O94906 941 aaKnown RBP9.27□□□□□ -0.93
SF3A1-210ENST00000498259 RPLP2P05387 115 aaKnown RBP9.27□□□□□ -0.93
SF3A1-210ENST00000498259 RSPH10BP0C881 870 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 MYBP10242 640 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 AKR1A1P14550 325 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 YY1P25490 414 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 NMT1P30419 496 aaKnown RBP9.27□□□□□ -0.93
SF3A1-210ENST00000498259 PSMC4P43686 418 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 PMS1P54277 932 aaKnown RBP9.27□□□□□ -0.93
SF3A1-210ENST00000498259 NPEPPSP55786 919 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 SP3Q02447 781 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 ENPEPQ07075 957 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 ARHGAP1Q07960 439 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 CCDC144BQ3MJ40 725 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 MAEAQ7L5Y9 396 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 ZBTB8OSQ8IWT0 167 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 LRRC8AQ8IWT6 810 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 C12orf56Q8IXR9 622 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 ZC3H3Q8IXZ2 948 aaKnown RBP9.27□□□□□ -0.93
SF3A1-210ENST00000498259 NAP1L5Q96NT1 182 aaPredicted RBP9.27□□□□□ -0.93
SF3A1-210ENST00000498259 MED15Q96RN5 788 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 NDST4Q9H3R1 872 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 PDLIM7Q9NR12 457 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 TAB2Q9NYJ8 693 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 TBX20Q9UMR3 447 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 DAAM1Q9Y4D1 1078 aa9.27□□□□□ -0.93
SF3A1-210ENST00000498259 DENND3A2RUS2 1198 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 H3BRB1 525 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 K7ERI5 159 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 SORBS3O60504 671 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 EXOC3O60645 756 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 N4BP1O75113 896 aaKnown RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 PPP1R37O75864 691 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 STBD1O95210 358 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms