RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TCTN3Q6NUS6 607 aa8.1□□□□□ -1.11
SF3B1-212ENST00000496458 RNF180Q86T96 592 aa8.1□□□□□ -1.11
SF3B1-212ENST00000496458 C11orf74Q86VG3 221 aa8.1□□□□□ -1.11
SF3B1-212ENST00000496458 MS4A5Q9H3V2 200 aa8.1□□□□□ -1.11
SF3B1-212ENST00000496458 MATN2O00339 956 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 KRTAP10-2P60368 255 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 ADAM17P78536 824 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 KIAA1841Q6NSI8 718 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 KLHDC10Q6PID8 442 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 UNQ6494/PRO21346Q6UXR6 183 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 UBR7Q8N806 425 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 DNERQ8NFT8 737 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 CFHR4Q92496 578 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 USP7Q93009 1102 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 DYDC2Q96IM9 177 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 SEMA4AQ9H3S1 761 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 MTG2Q9H4K7 406 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 EMC7Q9NPA0 242 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 MSRAQ9UJ68 235 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 DENND2AQ9ULE3 1009 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 VWA7Q9Y334 891 aa8.09□□□□□ -1.11
SF3B1-212ENST00000496458 LCHNA4D1U4 455 aa8.08□□□□□ -1.12
SF3B1-212ENST00000496458 PATE3B3GLJ2 98 aa8.08□□□□□ -1.12
SF3B1-212ENST00000496458 FOXS1O43638 330 aa8.08□□□□□ -1.12
SF3B1-212ENST00000496458 KANSL1Q7Z3B3 1105 aa8.08□□□□□ -1.12
SF3B1-212ENST00000496458 BMP8AQ7Z5Y6 402 aa8.08□□□□□ -1.12
SF3B1-212ENST00000496458 KRTAP3-1Q9BYR8 98 aa8.08□□□□□ -1.12
SF3B1-212ENST00000496458 CD248Q9HCU0 757 aa8.08□□□□□ -1.12
SF3B1-212ENST00000496458 POLR3BQ9NW08 1133 aaPredicted RBP8.08□□□□□ -1.12
SF3B1-212ENST00000496458 ZFR2Q9UPR6 939 aaKnown RBP8.08□□□□□ -1.12
SF3B1-212ENST00000496458 CLSTN1O94985 981 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 LSP1P33241 339 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 STAT3P40763 770 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 PHC1P78364 1004 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 HGFACQ04756 655 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 DHCR24Q15392 516 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 GPR158Q5T848 1215 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 ZNF585AQ6P3V2 769 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 ZNF610Q8N9Z0 462 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 ZNF496Q96IT1 587 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-212ENST00000496458 DEF6Q9H4E7 631 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 DNAI1Q9UI46 699 aa8.07□□□□□ -1.12
SF3B1-212ENST00000496458 CTDP1Q9Y5B0 961 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-212ENST00000496458 ELL2O00472 640 aaPredicted RBP8.06□□□□□ -1.12
SF3B1-212ENST00000496458 ZNF623O75123 536 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 H2AFYO75367 372 aaKnown RBP8.06□□□□□ -1.12
SF3B1-212ENST00000496458 ZNF20P17024 532 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 SESN2P58004 480 aaPredicted RBP8.06□□□□□ -1.12
SF3B1-212ENST00000496458 STRN3Q13033 797 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 TERF2Q15554 542 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 DDB1Q16531 1140 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 ESPNLQ6ZVH7 1005 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 DDX46Q7L014 1031 aaKnown RBP8.06□□□□□ -1.12
SF3B1-212ENST00000496458 FUKQ8N0W3 1084 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 Q8TCH9 128 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 NKD2Q969F2 451 aaPredicted RBP8.06□□□□□ -1.12
SF3B1-212ENST00000496458 GFM2Q969S9 779 aaKnown RBP8.06□□□□□ -1.12
SF3B1-212ENST00000496458 FERMT2Q96AC1 680 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 OR14A2Q96R54 314 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 PLA2G12BQ9BX93 195 aa8.06□□□□□ -1.12
SF3B1-212ENST00000496458 PITHD1Q9GZP4 211 aaPredicted RBP8.06□□□□□ -1.12
SF3B1-212ENST00000496458 USP36Q9P275 1121 aaKnown RBP8.06□□□□□ -1.12
SF3B1-212ENST00000496458 OPHN1O60890 802 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 BPIP17213 487 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 SOX5P35711 763 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 MASP1P48740 699 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 ATP13A4Q4VNC1 1196 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 ZBTB41Q5SVQ8 909 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 BROXQ5VW32 411 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 SLC5A5Q92911 643 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 DVL3Q92997 716 aaPredicted RBP8.05□□□□□ -1.12
SF3B1-212ENST00000496458 WDR92Q96MX6 357 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 WWC2-AS2Q96NR7 200 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 GPR20Q99678 358 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 NOL10Q9BSC4 688 aaKnown RBP8.05□□□□□ -1.12
SF3B1-212ENST00000496458 HAPLN2Q9GZV7 340 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 CAAP1Q9H8G2 361 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 TCAF1Q9Y4C2 921 aa8.05□□□□□ -1.12
SF3B1-212ENST00000496458 RBM8AQ9Y5S9 174 aaKnown RBP8.05□□□□□ -1.12
SF3B1-212ENST00000496458 A0A0A6YYJ9 748 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 ST20-MTHFSA0A0A6YYL1 179 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 NEMP1O14524 444 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 MAFGO15525 162 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 SLC26A4O43511 780 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 RAB11FIP3O75154 756 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 PCDH8O95206 1070 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 ID4P47928 161 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 ATP2C1P98194 919 aaPredicted RBP8.04□□□□□ -1.12
SF3B1-212ENST00000496458 DUSP8Q13202 625 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 ACAP1Q15027 740 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 STRA8Q7Z7C7 330 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 CHAC2Q8WUX2 184 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 GCDHQ92947 438 aaPredicted RBP8.04□□□□□ -1.12
SF3B1-212ENST00000496458 LPPQ93052 612 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 SLC7A6OSQ96CW6 309 aaPredicted RBP8.04□□□□□ -1.12
SF3B1-212ENST00000496458 TTC1Q99614 292 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 C1QTNF3Q9BXJ4 246 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 KLC2Q9H0B6 622 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 IFT22Q9H7X7 185 aa8.04□□□□□ -1.12
SF3B1-212ENST00000496458 SYNPO2Q9UMS6 1093 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms