RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MNAT1P51948 309 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 SLC15A2Q16348 729 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 GRIPAP1Q4V328 841 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 ICE2Q659A1 982 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 SYN2Q92777 582 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 SIX2Q9NPC8 291 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 COL20A1Q9P218 1284 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 PLAAQ9Y263 795 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 E7EVH7 732 aa18■□□□□ 0.47
CCDC88B-210ENST00000494566 NFIBO00712 420 aa18■□□□□ 0.47
CCDC88B-210ENST00000494566 OPA1O60313 960 aa18■□□□□ 0.47
CCDC88B-210ENST00000494566 PRELPP51888 382 aa18■□□□□ 0.47
CCDC88B-210ENST00000494566 ODF2Q5BJF6 829 aa18■□□□□ 0.47
CCDC88B-210ENST00000494566 LXNQ9BS40 222 aa18■□□□□ 0.47
CCDC88B-210ENST00000494566 NUCKS1Q9H1E3 243 aaKnown RBP18■□□□□ 0.47
CCDC88B-210ENST00000494566 VCPKMTQ9H867 229 aa18■□□□□ 0.47
CCDC88B-210ENST00000494566 FAM186BQ8IYM0 893 aa18■□□□□ 0.47
CCDC88B-210ENST00000494566 RANBP17Q9H2T7 1088 aaKnown RBP18■□□□□ 0.47
CCDC88B-210ENST00000494566 PARVGQ9HBI0 331 aa18■□□□□ 0.47
CCDC88B-210ENST00000494566 SEPT11Q9NVA2 429 aaKnown RBP18■□□□□ 0.47
CCDC88B-210ENST00000494566 LRRN2O75325 713 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 IFT88Q13099 833 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 ODR4Q5SWX8 454 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 UBLCP1Q8WVY7 318 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 SLC5A5Q92911 643 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 WDR11Q9BZH6 1224 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 ABCB4P21439 1286 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 GBP6Q6ZN66 633 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 FAM178BQ8IXR5 827 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 IFT20Q8IY31 132 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 ZNF341Q9BYN7 854 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 NEUROG2Q9H2A3 272 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 PCIF1Q9H4Z3 704 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 DCDC2CA8MYV0 355 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 IPO5O00410 1097 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 ITGB5P18084 799 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 CBWD6Q4V339 395 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 CBWD3Q5JTY5 395 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 CBWD5Q5RIA9 395 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 RNF10Q8N5U6 811 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 FIZ1Q96SL8 496 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 AMACRQ9UHK6 382 aa17.99■□□□□ 0.47
CCDC88B-210ENST00000494566 GOLGA8KD6RF30 607 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 SPDYE2Q495Y8 402 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 MCTP2Q6DN12 878 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 ALKBH5Q6P6C2 394 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 EFCAB13Q8IY85 973 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 CHURC1Q8WUH1 139 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 NAGPAQ9UK23 515 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 CCPG1Q9ULG6 757 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 EGFRP00533 1210 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 VIL1P09327 827 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 PRLRP16471 622 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 NR1D1P20393 614 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 RPL13P26373 211 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 HOXA7P31268 230 aaPredicted RBP17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 MSL3Q8N5Y2 521 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 ZSWIM2Q8NEG5 633 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 PIK3R5Q8WYR1 880 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 TAF4BQ92750 862 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 GMLQ99445 158 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 MYH11P35749 1972 aa17.98■□□□□ 0.47
CCDC88B-210ENST00000494566 LSP1P33241 339 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 ERVK-9P63128 1117 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 PPP2R5CQ13362 524 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 BMT2Q1RMZ1 405 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 MEI1Q5TIA1 1274 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 OTUD6BQ8N6M0 293 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 TTLL6Q8N841 843 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 IPO4Q8TEX9 1081 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 U2AF1L4Q8WU68 220 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 OLFML3Q9NRN5 406 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 MRPL11Q9Y3B7 192 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 A0A087WUV0 522 aaPredicted RBP17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 SHOX2O60902 331 aaPredicted RBP17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 HIP1RO75146 1068 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 CAP2P40123 477 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 ARHGAP44Q17R89 818 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 SUPT20HQ8NEM7 779 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 HOOK2Q96ED9 719 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 TUFT1Q9NNX1 390 aa17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 LUC7LQ9NQ29 371 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-210ENST00000494566 ZNF720Q7Z2F6 126 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 BORCS6Q96GS4 357 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 PLCB1Q9NQ66 1216 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 ATAD5Q96QE3 1844 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 SLC26A4O43511 780 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 ALAS1P13196 640 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 DPEP1P16444 411 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 EMBQ6PCB8 327 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 SYCP3Q8IZU3 236 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 DAW1Q8N136 415 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 RAVER2Q9HCJ3 691 aaKnown RBP17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 AGPAT3Q9NRZ7 376 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 PCDHGC5Q9Y5F6 944 aa17.96■□□□□ 0.47
CCDC88B-210ENST00000494566 ARHGEF35A5YM69 484 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 DDX3XO00571 662 aaKnown RBP eCLIP17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 DAPK3O43293 454 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 KIAA0754O94854 1291 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 PSMC2P35998 433 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms