RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 NOA1Q8NC60 698 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CNKSR2Q8WXI2 1034 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PANX2Q96RD6 677 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 BPIFA3Q9BQP9 254 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 FAM167BQ9BTA0 163 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 IVNS1ABPQ9Y6Y0 642 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CCDC160A6NGH7 325 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 LRRIQ3A6PVS8 624 aaPredicted RBP11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SLC9A1P19634 815 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RWDD2BP57060 319 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RSRC2Q7L4I2 434 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KIAA0895Q8NCT3 520 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CUEDC2Q9H467 287 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NOP53Q9NZM5 478 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CTTNBP2NLQ9P2B4 639 aa11.63□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ZNF185O15231 689 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GUCY2DQ02846 1103 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CFAP221Q4G0U5 840 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ALS2CLQ60I27 953 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TRIM65Q6PJ69 517 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MCF2L2Q86YR7 1114 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PNMA5Q96PV4 448 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NACC1Q96RE7 527 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 FGFBP2Q9BYJ0 223 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SEMA6BQ9H3T3 888 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 AZI2Q9H6S1 392 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KCNH7Q9NS40 1196 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TISP43B9A030 160 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RNF225M0QZC1 329 aaPredicted RBP11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KCNK3O14649 394 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CHRM1P11229 460 aaPredicted RBP11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KIF11P52732 1056 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TAF11Q15544 211 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 DBN1Q16643 649 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CCDC25Q86WR0 208 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GIMAP8Q8ND71 665 aaPredicted RBP11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TRIM7Q9C029 511 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 HPCAL4Q9UM19 191 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 VPS41P49754 854 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GUCY1A3Q02108 690 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 AP3B2Q13367 1082 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 COG2Q14746 738 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CCDC197Q8NCU1 140 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 UHMK1Q8TAS1 419 aaKnown RBP11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PDS5AQ29RF7 1337 aaKnown RBP11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MYO3BQ8WXR4 1341 aa11.62□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CSDE1O75534 798 aaKnown RBP11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RHOBTB3O94955 611 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NR3C1P04150 777 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NUP98P52948 1817 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SH2D3CQ8N5H7 860 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RNF10Q8N5U6 811 aaKnown RBP11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PPFIBP2Q8ND30 876 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NLRP4Q96MN2 994 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NUP58Q9BVL2 599 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 EHD2Q9NZN4 543 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ADM5C9JUS6 153 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 INO80B-WBP1J3KQ70 363 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PGK2P07205 417 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 STAT1P42224 750 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 LIG4P49917 911 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SUPT20HL1Q3ZLR7 823 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 DEPTORQ8TB45 409 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RNF217Q8TC41 542 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 HAS1Q92839 578 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TNFRSF25Q93038 417 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 APOL6Q9BWW8 343 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 INO80BQ9C086 356 aaPredicted RBP11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 THAP9Q9H5L6 903 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SLC40A1Q9NP59 571 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 BLOC1S4Q9NUP1 217 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 HAUS2Q9NVX0 235 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ANKRD62A6NC57 917 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 hCG_1984214I3L0E3 225 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MAP2K7O14733 419 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CD19P15391 556 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CYP11B2P19099 503 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CASP5P51878 434 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PRELPP51888 382 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 STRN3Q13033 797 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 DAAM2Q86T65 1068 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 FAM160B2Q86V87 743 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NLRP14Q86W24 1093 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ZNF713Q8N859 430 aaPredicted RBP11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TRIM58Q8NG06 486 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TMEM143Q96AN5 459 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SYNCQ9H7C4 482 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 UBE2TQ9NPD8 197 aaPredicted RBP11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KMT5AQ9NQR1 393 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 BATF3Q9NR55 127 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KBTBD4Q9NVX7 518 aa11.61□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GABPAQ06546 454 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 DMP1Q13316 513 aaPredicted RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 FAM133BQ5BKY9 247 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RASIP1Q5U651 963 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 IL31RAQ8NI17 732 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MRRFQ96E11 262 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NOX5Q96PH1 765 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MED15Q96RN5 788 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KCNK9Q9NPC2 374 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms