RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 POLGP54098 1239 aaPredicted RBP16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 PTH1RQ03431 593 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 PDXDC2PQ6P474 469 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 OTOP3Q7RTS5 596 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 ZNF598Q86UK7 904 aaKnown RBP16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 TMTC2Q8N394 836 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 C12orf76Q8N812 135 aaPredicted RBP16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 SLC22A17Q8WUG5 538 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 RUFY2Q8WXA3 655 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 BBXQ8WY36 941 aaPredicted RBP16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 TMEM169Q96HH4 297 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 FRYLO94915 3013 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 NCOR2Q9Y618 2525 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 A0A0U1RQF3 1178 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 CXCL14O95715 111 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 LMNAP02545 664 aaKnown RBP16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 VTNP04004 478 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 CTSAP10619 480 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 ATP4AP20648 1035 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 ALDH7A1P49419 539 aaKnown RBP16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 PPP1R18Q6NYC8 613 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 MIS18BP1Q6P0N0 1132 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 CCDC149Q6ZUS6 474 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 DGLUCYQ7Z3D6 616 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 PPFIBP1Q86W92 1011 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 RMDN1Q96DB5 314 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 PPP1R16BQ96T49 567 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 SFXN1Q9H9B4 322 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 CEP131Q9UPN4 1083 aa16.19■□□□□ 0.18
PRPF40A-211ENST00000493468 EPG5Q9HCE0 2579 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 MED19A0JLT2 244 aaPredicted RBP16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 MAGEB2O15479 319 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 EPCAMP16422 314 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 EIF4BP23588 611 aaKnown RBP16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 SREBF1P36956 1147 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 BCAR1P56945 870 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 CASC1Q6TDU7 716 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 TMTC3Q6ZXV5 915 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 HEATR3Q7Z4Q2 680 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 GPR149Q86SP6 731 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 VPS52Q8N1B4 723 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 CMTR1Q8N1G2 835 aaKnown RBP16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 LINC01465Q8N7H1 131 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 ANO3Q9BYT9 981 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 ADAMTS10Q9H324 1103 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 RIC8AQ9NPQ8 531 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 IGSF9Q9P2J2 1179 aa16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 MAFBQ9Y5Q3 323 aaPredicted RBP16.18■□□□□ 0.18
PRPF40A-211ENST00000493468 CCDC69A6NI79 296 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 SH2B2O14492 632 aaPredicted RBP16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 DHX15O43143 795 aaKnown RBP16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 CA8P35219 290 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 LIFRP42702 1097 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 METAP2P50579 478 aaKnown RBP eCLIP16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 AP3B2Q13367 1082 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 PUM1Q14671 1186 aaKnown RBP eCLIP16.17■□□□□ 0.186e-50■■□□□ 11.7
PRPF40A-211ENST00000493468 SWSAP1Q6NVH7 229 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 DDX53Q86TM3 631 aaKnown RBP16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 CABP7Q86V35 215 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 SIX5Q8N196 739 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 METTL13Q8N6R0 699 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 TMEM87AQ8NBN3 555 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 HELQQ8TDG4 1101 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 TMEM87BQ96K49 555 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 MAP7D2Q96T17 732 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 KCNK12Q9HB15 430 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 DACT1Q9NYF0 836 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 FBXL21Q9UKT6 434 aa16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 KMT2BQ9UMN6 2715 aaPredicted RBP16.17■□□□□ 0.18
PRPF40A-211ENST00000493468 hCG_1642624A0A1W2PR95 340 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 DDX39AO00148 427 aaKnown RBP16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 PRC1O43663 620 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 CLCN3P51790 818 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 NLRP11P59045 1033 aaKnown RBP16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 WWC2Q6AWC2 1192 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 KANK3Q6NY19 840 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 TMC5Q6UXY8 1006 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 NFXL1Q6ZNB6 911 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 C15orf39Q6ZRI6 1047 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 SMAP1Q8IYB5 467 aaPredicted RBP16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 RNF169Q8NCN4 708 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 WNT16Q9UBV4 365 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 STK39Q9UEW8 545 aa16.16■□□□□ 0.18
PRPF40A-211ENST00000493468 DOCK8Q8NF50 2099 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 NT5C1B-RDH14C9J2C7 533 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 hCG_1984214I3L0E3 225 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 DARSP14868 501 aaKnown RBP16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 RXRAP19793 462 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 TMOD1P28289 359 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 MCM5P33992 734 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 ZNF746Q6NUN9 644 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 TMEM173Q86WV6 379 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 CKAP2LQ8IYA6 745 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 ZNF713Q8N859 430 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 KCNG4Q8TDN1 519 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 AUTS2Q8WXX7 1259 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 MAP4K1Q92918 833 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 IGSF21Q96ID5 467 aa16.15■□□□□ 0.18
PRPF40A-211ENST00000493468 PGBD1Q96JS3 809 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms