RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 EXOC3L4Q17RC7 722 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 PADI6Q6TGC4 694 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 GBP6Q6ZN66 633 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.77□□□□□ -0.53
USP4-214ENST00000491791 HS2ST1Q7LGA3 356 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 FMNL3Q8IVF7 1028 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 FAM178BQ8IXR5 827 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 CCDC155Q8N6L0 562 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 VTI1AQ96AJ9 217 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 HVCN1Q96D96 273 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 CDHR1Q96JP9 859 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 IWS1Q96ST2 819 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 RMDN3Q96TC7 470 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 LSM14BQ9BX40 385 aaKnown RBP11.77□□□□□ -0.53
USP4-214ENST00000491791 IFIH1Q9BYX4 1025 aaKnown RBP11.77□□□□□ -0.53
USP4-214ENST00000491791 GBP3Q9H0R5 595 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 ZHX3Q9H4I2 956 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 TMEM206Q9H813 350 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 HOXC10Q9NYD6 342 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 LARSQ9P2J5 1176 aaKnown RBP11.77□□□□□ -0.53
USP4-214ENST00000491791 ZNF214Q9UL59 606 aaPredicted RBP11.77□□□□□ -0.53
USP4-214ENST00000491791 NENFQ9UMX5 172 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 GUCA1BQ9UMX6 200 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 AFG3L2Q9Y4W6 797 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 ZHX2Q9Y6X8 837 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 PFASO15067 1338 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 SSC5DA1L4H1 1573 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 CCDC151A5D8V7 595 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 ZBTB39O15060 712 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 CHMP2AO43633 222 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 AKR1B10O60218 316 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 PPP1R12BO60237 982 aaPredicted RBP11.76□□□□□ -0.53
USP4-214ENST00000491791 DKC1O60832 514 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP4-214ENST00000491791 HIP1RO75146 1068 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 PLS3P13797 630 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 SCP2P22307 547 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 RFX1P22670 979 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 NMT1P30419 496 aaKnown RBP11.76□□□□□ -0.53
USP4-214ENST00000491791 MAGEA1P43355 309 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 RTP1P59025 263 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 POLR2FP61218 127 aaKnown RBP11.76□□□□□ -0.53
USP4-214ENST00000491791 GTF2BQ00403 316 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 SREBF2Q12772 1141 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 SLC18A3Q16572 532 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 ARMC9Q7Z3E5 817 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 IRF2BP2Q7Z5L9 587 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 NLRX1Q86UT6 975 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 SMAP1Q8IYB5 467 aaPredicted RBP11.76□□□□□ -0.53
USP4-214ENST00000491791 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP4-214ENST00000491791 NSUN6Q8TEA1 469 aaKnown RBP11.76□□□□□ -0.53
USP4-214ENST00000491791 SECISBP2LQ93073 1101 aaKnown RBP11.76□□□□□ -0.53
USP4-214ENST00000491791 ATG4CQ96DT6 458 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 DRC1Q96MC2 740 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 WRNIP1Q96S55 665 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 NTPCRQ9BSD7 190 aaKnown RBP11.76□□□□□ -0.53
USP4-214ENST00000491791 C17orf75Q9HAS0 396 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 SIX2Q9NPC8 291 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 AGPAT3Q9NRZ7 376 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 RNF146Q9NTX7 359 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 ZNF446Q9NWS9 450 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP4-214ENST00000491791 SAR1BQ9Y6B6 198 aa11.76□□□□□ -0.53
USP4-214ENST00000491791 V9GYY5 206 aaPredicted RBP11.76□□□□□ -0.53
USP4-214ENST00000491791 A0A0G2JMZ2 1700 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 CTAGE15A4D2H0 777 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 TACC1O75410 805 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 PLEKP08567 350 aaPredicted RBP11.75□□□□□ -0.53
USP4-214ENST00000491791 CTAGE8P0CG41 777 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 UCHL3P15374 230 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 ICAM3P32942 547 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 ABCD1P33897 745 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 CLCN6P51797 869 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 BMS1Q14692 1282 aaKnown RBP11.75□□□□□ -0.53
USP4-214ENST00000491791 ODR4Q5SWX8 454 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 SLC30A10Q6XR72 485 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 CTAGE6Q86UF2 777 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 CTAGE4Q8IX94 777 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 FAM186BQ8IYM0 893 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 CPXCR1Q8N123 301 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 BANK1Q8NDB2 785 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 CHST13Q8NET6 341 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 SPIRE2Q8WWL2 714 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 RUBCNQ92622 972 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 MOV10L1Q9BXT6 1211 aaKnown RBP11.75□□□□□ -0.53
USP4-214ENST00000491791 TEX13BQ9BXU2 312 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 TRIM10Q9UDY6 481 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 KCNG1Q9UIX4 513 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 INTUQ9ULD6 942 aa11.75□□□□□ -0.53
USP4-214ENST00000491791 CTDP1Q9Y5B0 961 aaPredicted RBP11.75□□□□□ -0.53
USP4-214ENST00000491791 TARSL2A2RTX5 802 aaKnown RBP11.74□□□□□ -0.53
USP4-214ENST00000491791 SPATA31C2B4DYI2 1134 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 STBD1O95210 358 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 CCNE2O96020 404 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 NR3C2P08235 984 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 ZSCAN20P17040 1043 aaPredicted RBP11.74□□□□□ -0.53
USP4-214ENST00000491791 YWHABP31946 246 aaKnown RBP11.74□□□□□ -0.53
USP4-214ENST00000491791 TM4SF4P48230 202 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 CASP4P49662 377 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 NCKAP1LP55160 1127 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 FAM193AP78312 1265 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms