RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 GPM6BQ13491 265 aa28■■■□□ 2.07
HMGN1-217ENST00000489072 CTTNQ14247 550 aaKnown RBP28■■■□□ 2.07
HMGN1-217ENST00000489072 C4orf19Q8IY42 314 aa28■■■□□ 2.07
HMGN1-217ENST00000489072 TMEM60Q9H2L4 133 aa28■■■□□ 2.07
HMGN1-217ENST00000489072 C1orf112Q9NSG2 853 aa28■■■□□ 2.07
HMGN1-217ENST00000489072 PCDHA12Q9UN75 941 aa28■■■□□ 2.07
HMGN1-217ENST00000489072 CD2BP2O95400 341 aaKnown RBP27.99■■■□□ 2.07
HMGN1-217ENST00000489072 BMPR1AP36894 532 aa27.99■■■□□ 2.07
HMGN1-217ENST00000489072 TJAP1Q5JTD0 557 aa27.99■■■□□ 2.07
HMGN1-217ENST00000489072 SLC24A5Q71RS6 500 aa27.99■■■□□ 2.07
HMGN1-217ENST00000489072 CMTR2Q8IYT2 770 aaKnown RBP27.99■■■□□ 2.07
HMGN1-217ENST00000489072 FAM184AQ8NB25 1140 aa27.99■■■□□ 2.07
HMGN1-217ENST00000489072 NLRP7Q8WX94 980 aa27.99■■■□□ 2.07
HMGN1-217ENST00000489072 SCLT1Q96NL6 688 aa27.99■■■□□ 2.07
HMGN1-217ENST00000489072 FOXP1Q9H334 677 aaPredicted RBP27.99■■■□□ 2.07
HMGN1-217ENST00000489072 TTC12Q9H892 705 aaPredicted RBP27.99■■■□□ 2.07
HMGN1-217ENST00000489072 LRFN2Q9ULH4 789 aa27.99■■■□□ 2.07
HMGN1-217ENST00000489072 MRPL42Q9Y6G3 142 aaKnown RBP27.99■■■□□ 2.07
HMGN1-217ENST00000489072 C5orf67F2Z3F1 127 aa27.98■■■□□ 2.07
HMGN1-217ENST00000489072 ZBTB39O15060 712 aa27.98■■■□□ 2.07
HMGN1-217ENST00000489072 FGFR4P22455 802 aa27.98■■■□□ 2.07
HMGN1-217ENST00000489072 TXKP42681 527 aa27.98■■■□□ 2.07
HMGN1-217ENST00000489072 PAN2Q504Q3 1202 aaKnown RBP27.98■■■□□ 2.07
HMGN1-217ENST00000489072 MRPL38Q96DV4 380 aaKnown RBP27.98■■■□□ 2.07
HMGN1-217ENST00000489072 CEP170P1Q96L14 293 aa27.98■■■□□ 2.07
HMGN1-217ENST00000489072 ASB2Q96Q27 587 aa27.98■■■□□ 2.07
HMGN1-217ENST00000489072 EIF2AK1Q9BQI3 630 aaKnown RBP27.98■■■□□ 2.07
HMGN1-217ENST00000489072 ZSWIM4Q9H7M6 989 aa27.98■■■□□ 2.07
HMGN1-217ENST00000489072 SUCLA2Q9P2R7 463 aaPredicted RBP27.98■■■□□ 2.07
HMGN1-217ENST00000489072 PCDHB7Q9Y5E2 793 aa27.98■■■□□ 2.07
HMGN1-217ENST00000489072 NCOR1O75376 2440 aa27.98■■■□□ 2.07
HMGN1-217ENST00000489072 ST18O60284 1047 aa27.97■■■□□ 2.07
HMGN1-217ENST00000489072 CSDE1O75534 798 aaKnown RBP27.97■■■□□ 2.07
HMGN1-217ENST00000489072 SLITRK3O94933 977 aa27.97■■■□□ 2.07
HMGN1-217ENST00000489072 YWHABP31946 246 aaKnown RBP27.97■■■□□ 2.07
HMGN1-217ENST00000489072 MCM7P33993 719 aa27.97■■■□□ 2.07
HMGN1-217ENST00000489072 DNM2P50570 870 aa27.97■■■□□ 2.07
HMGN1-217ENST00000489072 FAM189BP81408 668 aa27.97■■■□□ 2.07
HMGN1-217ENST00000489072 MRPS5P82675 430 aaKnown RBP27.97■■■□□ 2.07
HMGN1-217ENST00000489072 TFF2Q03403 129 aa27.97■■■□□ 2.07
HMGN1-217ENST00000489072 HSD17B14Q9BPX1 270 aa27.97■■■□□ 2.07
HMGN1-217ENST00000489072 UPF2Q9HAU5 1272 aaKnown RBP27.97■■■□□ 2.07
HMGN1-217ENST00000489072 RWDD3Q9Y3V2 267 aa27.97■■■□□ 2.07
HMGN1-217ENST00000489072 A0A087WZ62 844 aa27.96■■■□□ 2.07
HMGN1-217ENST00000489072 RB1P06400 928 aa27.96■■■□□ 2.07
HMGN1-217ENST00000489072 RHPN2Q8IUC4 686 aa27.96■■■□□ 2.07
HMGN1-217ENST00000489072 KSR1Q8IVT5 923 aa27.96■■■□□ 2.07
HMGN1-217ENST00000489072 TPH2Q8IWU9 490 aa27.96■■■□□ 2.07
HMGN1-217ENST00000489072 TBC1D32Q96NH3 1257 aa27.96■■■□□ 2.07
HMGN1-217ENST00000489072 JPH2Q9BR39 696 aaPredicted RBP27.96■■■□□ 2.07
HMGN1-217ENST00000489072 FDXACB1Q9BRP7 624 aaPredicted RBP27.96■■■□□ 2.07
HMGN1-217ENST00000489072 DHX33Q9H6R0 707 aaKnown RBP27.96■■■□□ 2.07
HMGN1-217ENST00000489072 FAM102BQ5T8I3 360 aa27.95■■■□□ 2.06
HMGN1-217ENST00000489072 GCOM2Q9BZD3 368 aaPredicted RBP27.95■■■□□ 2.06
HMGN1-217ENST00000489072 BMP2KQ9NSY1 1161 aaPredicted RBP27.95■■■□□ 2.06
HMGN1-217ENST00000489072 PPME1Q9Y570 386 aa27.95■■■□□ 2.06
HMGN1-217ENST00000489072 TCF20Q9UGU0 1960 aaKnown RBP27.94■■■□□ 2.06
HMGN1-217ENST00000489072 POTEMA6NI47 508 aa27.94■■■□□ 2.06
HMGN1-217ENST00000489072 POLGP54098 1239 aaPredicted RBP27.94■■■□□ 2.06
HMGN1-217ENST00000489072 CDC42EP1Q00587 391 aa27.94■■■□□ 2.06
HMGN1-217ENST00000489072 ZNF174Q15697 407 aa27.94■■■□□ 2.06
HMGN1-217ENST00000489072 PTPROQ16827 1216 aa27.94■■■□□ 2.06
HMGN1-217ENST00000489072 ZNF410Q86VK4 478 aa27.94■■■□□ 2.06
HMGN1-217ENST00000489072 NOSTRINQ8IVI9 506 aa27.94■■■□□ 2.06
HMGN1-217ENST00000489072 SLC7A3Q8WY07 619 aa27.94■■■□□ 2.06
HMGN1-217ENST00000489072 TMX3Q96JJ7 454 aa27.94■■■□□ 2.06
HMGN1-217ENST00000489072 C11orf84Q9BUA3 381 aaPredicted RBP27.94■■■□□ 2.06
HMGN1-217ENST00000489072 TMEM161AQ9NX61 479 aa27.94■■■□□ 2.06
HMGN1-217ENST00000489072 GRM6O15303 877 aa27.93■■■□□ 2.06
HMGN1-217ENST00000489072 LYPLA2O95372 231 aa27.93■■■□□ 2.06
HMGN1-217ENST00000489072 FGFR1P11362 822 aa27.93■■■□□ 2.06
HMGN1-217ENST00000489072 RFC5P40937 340 aa27.93■■■□□ 2.06
HMGN1-217ENST00000489072 XKR9Q5GH70 373 aa27.93■■■□□ 2.06
HMGN1-217ENST00000489072 OTUD6AQ7L8S5 288 aa27.93■■■□□ 2.06
HMGN1-217ENST00000489072 TMEM143Q96AN5 459 aa27.93■■■□□ 2.06
HMGN1-217ENST00000489072 NLRP4Q96MN2 994 aa27.93■■■□□ 2.06
HMGN1-217ENST00000489072 ELAC1Q9H777 363 aaKnown RBP27.93■■■□□ 2.06
HMGN1-217ENST00000489072 COG5Q9UP83 839 aa27.93■■■□□ 2.06
HMGN1-217ENST00000489072 TBKBP1A7MCY6 615 aa27.92■■■□□ 2.06
HMGN1-217ENST00000489072 ZSCAN20P17040 1043 aaPredicted RBP27.92■■■□□ 2.06
HMGN1-217ENST00000489072 EMC2Q15006 297 aa27.92■■■□□ 2.06
HMGN1-217ENST00000489072 NEK9Q8TD19 979 aa27.92■■■□□ 2.06
HMGN1-217ENST00000489072 SYMPKQ92797 1274 aaKnown RBP27.92■■■□□ 2.06
HMGN1-217ENST00000489072 HLA-CQ95604 372 aa27.92■■■□□ 2.06
HMGN1-217ENST00000489072 PLVAPQ9BX97 442 aa27.92■■■□□ 2.06
HMGN1-217ENST00000489072 ATP6V0A4Q9HBG4 840 aa27.92■■■□□ 2.06
HMGN1-217ENST00000489072 RNF19AQ9NV58 838 aa27.92■■■□□ 2.06
HMGN1-217ENST00000489072 RNF216Q9NWF9 866 aaPredicted RBP27.92■■■□□ 2.06
HMGN1-217ENST00000489072 COL4A3BPQ9Y5P4 624 aa27.92■■■□□ 2.06
HMGN1-217ENST00000489072 U2AF2P26368 475 aaKnown RBP eCLIP27.91■■■□□ 2.068e-8■■■■■ 35
HMGN1-217ENST00000489072 GNL2Q13823 731 aaKnown RBP27.91■■■□□ 2.06
HMGN1-217ENST00000489072 TTC38Q5R3I4 469 aa27.91■■■□□ 2.06
HMGN1-217ENST00000489072 ECHDC2Q86YB7 292 aa27.91■■■□□ 2.06
HMGN1-217ENST00000489072 EXOC8Q8IYI6 725 aa27.91■■■□□ 2.06
HMGN1-217ENST00000489072 PRPF31Q8WWY3 499 aaKnown RBP27.91■■■□□ 2.06
HMGN1-217ENST00000489072 IFT122Q9HBG6 1241 aa27.91■■■□□ 2.06
HMGN1-217ENST00000489072 HCSTQ9UBK5 93 aa27.91■■■□□ 2.06
HMGN1-217ENST00000489072 BDP1A6H8Y1 2624 aa27.91■■■□□ 2.06
HMGN1-217ENST00000489072 PLXNA4Q9HCM2 1894 aa27.9■■■□□ 2.06
HMGN1-217ENST00000489072 KCNQ1P51787 676 aa27.9■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms