RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 FOSP01100 380 aaPredicted RBP17.45■□□□□ 0.38
MCF2L-228ENST00000487354 PPM1AP35813 382 aa17.45■□□□□ 0.38
MCF2L-228ENST00000487354 ADCY7P51828 1080 aa17.45■□□□□ 0.38
MCF2L-228ENST00000487354 ITIH3Q06033 890 aa17.45■□□□□ 0.38
MCF2L-228ENST00000487354 CWF19L1Q69YN2 538 aaKnown RBP17.45■□□□□ 0.38
MCF2L-228ENST00000487354 TMEM173Q86WV6 379 aaPredicted RBP17.45■□□□□ 0.38
MCF2L-228ENST00000487354 BBXQ8WY36 941 aaPredicted RBP17.45■□□□□ 0.38
MCF2L-228ENST00000487354 NECTIN4Q96NY8 510 aa17.45■□□□□ 0.38
MCF2L-228ENST00000487354 SPG21Q9NZD8 308 aa17.45■□□□□ 0.38
MCF2L-228ENST00000487354 PUF60Q9UHX1 559 aaKnown RBP17.45■□□□□ 0.38
MCF2L-228ENST00000487354 HOXA2O43364 376 aa17.44■□□□□ 0.38
MCF2L-228ENST00000487354 AP3B2Q13367 1082 aa17.44■□□□□ 0.38
MCF2L-228ENST00000487354 SMC1AQ14683 1233 aaKnown RBP17.44■□□□□ 0.38
MCF2L-228ENST00000487354 NECTIN1Q15223 517 aa17.44■□□□□ 0.38
MCF2L-228ENST00000487354 TPRNQ4KMQ1 711 aa17.44■□□□□ 0.38
MCF2L-228ENST00000487354 MIS18BP1Q6P0N0 1132 aa17.44■□□□□ 0.38
MCF2L-228ENST00000487354 APOA5Q6Q788 366 aa17.44■□□□□ 0.38
MCF2L-228ENST00000487354 TMC7Q7Z402 723 aa17.44■□□□□ 0.38
MCF2L-228ENST00000487354 PLA2G4DQ86XP0 818 aa17.44■□□□□ 0.38
MCF2L-228ENST00000487354 C12orf76Q8N812 135 aaPredicted RBP17.44■□□□□ 0.38
MCF2L-228ENST00000487354 FAM217BQ9NTX9 383 aaPredicted RBP17.44■□□□□ 0.38
MCF2L-228ENST00000487354 SMCO2A6NFE2 343 aa17.43■□□□□ 0.38
MCF2L-228ENST00000487354 IPO5O00410 1097 aaKnown RBP17.43■□□□□ 0.38
MCF2L-228ENST00000487354 CYP3A4P08684 503 aa17.43■□□□□ 0.38
MCF2L-228ENST00000487354 NLRP11P59045 1033 aaKnown RBP17.43■□□□□ 0.38
MCF2L-228ENST00000487354 CREB3L3Q68CJ9 461 aa17.43■□□□□ 0.38
MCF2L-228ENST00000487354 ASTLQ6HA08 431 aaPredicted RBP17.43■□□□□ 0.38
MCF2L-228ENST00000487354 KIAA1841Q6NSI8 718 aa17.43■□□□□ 0.38
MCF2L-228ENST00000487354 ZDHHC14Q8IZN3 488 aa17.43■□□□□ 0.38
MCF2L-228ENST00000487354 METTL13Q8N6R0 699 aa17.43■□□□□ 0.38
MCF2L-228ENST00000487354 BCL7CQ8WUZ0 217 aaPredicted RBP17.43■□□□□ 0.38
MCF2L-228ENST00000487354 ZNF668Q96K58 619 aaPredicted RBP17.43■□□□□ 0.38
MCF2L-228ENST00000487354 ZBP1Q9H171 429 aa17.43■□□□□ 0.38
MCF2L-228ENST00000487354 BARHL2Q9NY43 387 aa17.43■□□□□ 0.38
MCF2L-228ENST00000487354 BRPF3Q9ULD4 1205 aa17.43■□□□□ 0.38
MCF2L-228ENST00000487354 NT5C1B-RDH14C9J2C7 533 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 ZNF862O60290 1169 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 EPCAMP16422 314 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 EIF4BP23588 611 aaKnown RBP17.42■□□□□ 0.38
MCF2L-228ENST00000487354 FOXK2Q01167 660 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 RARS2Q5T160 578 aaKnown RBP17.42■□□□□ 0.38
MCF2L-228ENST00000487354 ZNF746Q6NUN9 644 aaPredicted RBP17.42■□□□□ 0.38
MCF2L-228ENST00000487354 FRMD5Q7Z6J6 570 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 LRRC71Q8N4P6 559 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 HELQQ8TDG4 1101 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 SLC22A17Q8WUG5 538 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 AUTS2Q8WXX7 1259 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 LENG9Q96B70 501 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 VN1R3Q9BXE9 311 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 DOCK8Q8NF50 2099 aa17.42■□□□□ 0.38
MCF2L-228ENST00000487354 A0A0U1RQF3 1178 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 hCG_1984214I3L0E3 225 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 EDIL3O43854 480 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 NPR3P17342 541 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 FGFR4P22455 802 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 MTHFRP42898 656 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 METAP2P50579 478 aaKnown RBP eCLIP17.41■□□□□ 0.38
MCF2L-228ENST00000487354 GPC3P51654 580 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 BCAR1P56945 870 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 KRT17Q04695 432 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 JAKMIP3Q5VZ66 844 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 CES5AQ6NT32 575 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 TRMT1LQ7Z2T5 733 aaKnown RBP17.41■□□□□ 0.38
MCF2L-228ENST00000487354 ZNF713Q8N859 430 aaPredicted RBP17.41■□□□□ 0.38
MCF2L-228ENST00000487354 TDRD5Q8NAT2 981 aaKnown RBP17.41■□□□□ 0.38
MCF2L-228ENST00000487354 RBM28Q9NW13 759 aaKnown RBP17.41■□□□□ 0.38
MCF2L-228ENST00000487354 GABBR1Q9UBS5 961 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 LIMD1Q9UGP4 676 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 V9GY48 417 aaPredicted RBP17.41■□□□□ 0.38
MCF2L-228ENST00000487354 FANCMQ8IYD8 2048 aa17.41■□□□□ 0.38
MCF2L-228ENST00000487354 B4GALT3O60512 393 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 DARSP14868 501 aaKnown RBP17.4■□□□□ 0.38
MCF2L-228ENST00000487354 CDC27P30260 824 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 ZNF76P36508 570 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 EFCAB12Q6NXP0 572 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 CKAP2LQ8IYA6 745 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 SMAP1Q8IYB5 467 aaPredicted RBP17.4■□□□□ 0.38
MCF2L-228ENST00000487354 ABI1Q8IZP0 508 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 RNF169Q8NCN4 708 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 TCEANC2Q96MN5 208 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 ZNF577Q9BSK1 485 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 AKT3Q9Y243 479 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 IRAK3Q9Y616 596 aa17.4■□□□□ 0.38
MCF2L-228ENST00000487354 FRYLO94915 3013 aa17.39■□□□□ 0.38
MCF2L-228ENST00000487354 MAGEB2O15479 319 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 PI15O43692 258 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 EOMESO95936 686 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 CLCN5P51795 746 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 EXOSC10Q01780 885 aaKnown RBP17.39■□□□□ 0.37
MCF2L-228ENST00000487354 DRP2Q13474 957 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 UGCGQ16739 394 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 RTN1Q16799 776 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 VPS52Q8N1B4 723 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 TBC1D22BQ9NU19 505 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 DZANK1Q9NVP4 752 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 CEP131Q9UPN4 1083 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 USTQ9Y2C2 406 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 PCDHA10Q9Y5I2 948 aa17.39■□□□□ 0.37
MCF2L-228ENST00000487354 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.38■□□□□ 0.37
MCF2L-228ENST00000487354 MEIS3P2A8K0S8 358 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms