RNA–Protein interactions for RNA: ENST00000485870.1

COL1A1-206, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 403 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-206ENST00000485870 NEK9Q8TD19 979 aa20.59■□□□□ 0.89
COL1A1-206ENST00000485870 SLC7A3Q8WY07 619 aa20.59■□□□□ 0.89
COL1A1-206ENST00000485870 HSD17B14Q9BPX1 270 aa20.59■□□□□ 0.89
COL1A1-206ENST00000485870 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.59■□□□□ 0.89
COL1A1-206ENST00000485870 ARID2Q68CP9 1835 aa20.59■□□□□ 0.89
COL1A1-206ENST00000485870 ADGRA3Q8IWK6 1321 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 COL4A6Q14031 1691 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 H3BQV1 296 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 STAG3L1P0CL83 205 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 DARSP14868 501 aaKnown RBP20.58■□□□□ 0.89
COL1A1-206ENST00000485870 FGFR4P22455 802 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 RFC5P40937 340 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 TECP42680 631 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 SARSP49591 514 aaKnown RBP20.58■□□□□ 0.89
COL1A1-206ENST00000485870 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.58■□□□□ 0.89
COL1A1-206ENST00000485870 FIBCD1Q8N539 461 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 FBXO22Q8NEZ5 403 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 RC3H2Q9HBD1 1191 aaKnown RBP20.58■□□□□ 0.89
COL1A1-206ENST00000485870 RGS18Q9NS28 235 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 LRFN2Q9ULH4 789 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 PPME1Q9Y570 386 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 MTCH2Q9Y6C9 303 aa20.58■□□□□ 0.89
COL1A1-206ENST00000485870 NLRC5Q86WI3 1866 aa20.58■□□□□ 0.88
COL1A1-206ENST00000485870 A0A087WZ62 844 aa20.57■□□□□ 0.88
COL1A1-206ENST00000485870 LPXNO60711 386 aa20.57■□□□□ 0.88
COL1A1-206ENST00000485870 CSDE1O75534 798 aaKnown RBP20.57■□□□□ 0.88
COL1A1-206ENST00000485870 DGKIO75912 1065 aa20.57■□□□□ 0.88
COL1A1-206ENST00000485870 TOB1P50616 345 aaPredicted RBP20.57■□□□□ 0.88
COL1A1-206ENST00000485870 BTG3Q14201 252 aaPredicted RBP20.57■□□□□ 0.88
COL1A1-206ENST00000485870 KSR1Q8IVT5 923 aa20.57■□□□□ 0.88
COL1A1-206ENST00000485870 TMEM143Q96AN5 459 aa20.57■□□□□ 0.88
COL1A1-206ENST00000485870 ZNF689Q96CS4 500 aaPredicted RBP20.57■□□□□ 0.88
COL1A1-206ENST00000485870 NLRP4Q96MN2 994 aa20.57■□□□□ 0.88
COL1A1-206ENST00000485870 FDXACB1Q9BRP7 624 aaPredicted RBP20.57■□□□□ 0.88
COL1A1-206ENST00000485870 GCOM2Q9BZD3 368 aaPredicted RBP20.57■□□□□ 0.88
COL1A1-206ENST00000485870 DHX33Q9H6R0 707 aaKnown RBP20.57■□□□□ 0.88
COL1A1-206ENST00000485870 C1orf112Q9NSG2 853 aa20.57■□□□□ 0.88
COL1A1-206ENST00000485870 A0A0C4DFX4 3053 aa20.57■□□□□ 0.88
COL1A1-206ENST00000485870 A0A087WWV3 80 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 LYPLA2O95372 231 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 CDC42EP1Q00587 391 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 EMC2Q15006 297 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 PAN2Q504Q3 1202 aaKnown RBP20.56■□□□□ 0.88
COL1A1-206ENST00000485870 EPC2Q52LR7 807 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 SLC24A5Q71RS6 500 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 EXOC8Q8IYI6 725 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 CRIPAKQ8N1N5 446 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 CCDC43Q96MW1 224 aaKnown RBP20.56■□□□□ 0.88
COL1A1-206ENST00000485870 SAMD11Q96NU1 681 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 PRDM6Q9NQX0 595 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 PCDHB7Q9Y5E2 793 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 PCDHB6Q9Y5E3 794 aa20.56■□□□□ 0.88
COL1A1-206ENST00000485870 C9IYK1 514 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 ZSCAN20P17040 1043 aaPredicted RBP20.55■□□□□ 0.88
COL1A1-206ENST00000485870 POU3F3P20264 500 aaPredicted RBP20.55■□□□□ 0.88
COL1A1-206ENST00000485870 CTNNB1P35222 781 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 GATMP50440 423 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 DSC3Q14574 896 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 FAM43BQ6ZT52 329 aaPredicted RBP20.55■□□□□ 0.88
COL1A1-206ENST00000485870 ZNF410Q86VK4 478 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 TMEM192Q8IY95 271 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 C4orf32Q8N8J7 132 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 PIGOQ8TEQ8 1089 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 PSPC1Q8WXF1 523 aaKnown RBP20.55■□□□□ 0.88
COL1A1-206ENST00000485870 ANKEF1Q9NU02 776 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 COL4A3BPQ9Y5P4 624 aa20.55■□□□□ 0.88
COL1A1-206ENST00000485870 RALGAPA2Q2PPJ7 1873 aa20.54■□□□□ 0.88
COL1A1-206ENST00000485870 MED24O75448 989 aa20.54■□□□□ 0.88
COL1A1-206ENST00000485870 SPATA31C1P0DKV0 1188 aa20.54■□□□□ 0.88
COL1A1-206ENST00000485870 PTGDRQ13258 359 aa20.54■□□□□ 0.88
COL1A1-206ENST00000485870 LARP1BQ659C4 914 aaKnown RBP20.54■□□□□ 0.88
COL1A1-206ENST00000485870 CATSPER3Q86XQ3 398 aa20.54■□□□□ 0.88
COL1A1-206ENST00000485870 PRPF31Q8WWY3 499 aaKnown RBP20.54■□□□□ 0.88
COL1A1-206ENST00000485870 MTRQ99707 1265 aa20.54■□□□□ 0.88
COL1A1-206ENST00000485870 TUFT1Q9NNX1 390 aa20.54■□□□□ 0.88
COL1A1-206ENST00000485870 GAS2O43903 313 aaKnown RBP20.53■□□□□ 0.88
COL1A1-206ENST00000485870 SFPQP23246 707 aaKnown RBP eCLIP20.53■□□□□ 0.88
COL1A1-206ENST00000485870 RARRES1P49788 294 aa20.53■□□□□ 0.88
COL1A1-206ENST00000485870 LAMTOR4Q0VGL1 99 aa20.53■□□□□ 0.88
COL1A1-206ENST00000485870 CUL4AQ13619 759 aa20.53■□□□□ 0.88
COL1A1-206ENST00000485870 CMTR2Q8IYT2 770 aaKnown RBP20.53■□□□□ 0.88
COL1A1-206ENST00000485870 ERMNQ8TAM6 284 aa20.53■□□□□ 0.88
COL1A1-206ENST00000485870 TCP11Q8WWU5 503 aa20.53■□□□□ 0.88
COL1A1-206ENST00000485870 XPNPEP1Q9NQW7 623 aa20.53■□□□□ 0.88
COL1A1-206ENST00000485870 MRPL42Q9Y6G3 142 aaKnown RBP20.53■□□□□ 0.88
COL1A1-206ENST00000485870 REV3LO60673 3130 aa20.53■□□□□ 0.88
COL1A1-206ENST00000485870 LINC00271P0C7V0 271 aa20.52■□□□□ 0.88
COL1A1-206ENST00000485870 SRGAP2CP0DJJ0 459 aa20.52■□□□□ 0.88
COL1A1-206ENST00000485870 FXR2P51116 673 aaKnown RBP eCLIP20.52■□□□□ 0.88
COL1A1-206ENST00000485870 GPM6BQ13491 265 aa20.52■□□□□ 0.88
COL1A1-206ENST00000485870 SKIV2LQ15477 1246 aaKnown RBP20.52■□□□□ 0.88
COL1A1-206ENST00000485870 POTEGQ6S5H5 508 aa20.52■□□□□ 0.88
COL1A1-206ENST00000485870 CLP1Q92989 425 aaKnown RBP20.52■□□□□ 0.88
COL1A1-206ENST00000485870 POLR3CQ9BUI4 534 aaPredicted RBP20.52■□□□□ 0.88
COL1A1-206ENST00000485870 INO80BQ9C086 356 aaPredicted RBP20.52■□□□□ 0.88
COL1A1-206ENST00000485870 ATP6V0A4Q9HBG4 840 aa20.52■□□□□ 0.88
COL1A1-206ENST00000485870 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.52■□□□□ 0.88
COL1A1-206ENST00000485870 RNF216Q9NWF9 866 aaPredicted RBP20.52■□□□□ 0.88
COL1A1-206ENST00000485870 TMEM161AQ9NX61 479 aa20.52■□□□□ 0.88
COL1A1-206ENST00000485870 TBKBP1A7MCY6 615 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms